RetrogeneDB ID:
retro_ecab_1074
Organism:
Horse ( Equus_caballus )
Location:
X:56927347-56928043 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
61.21 %
Coverage:
57.71 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
TRAPPC13
Parental gene aliases:
No gene alias available
Parental gene description:
trafficking protein particle complex 13 [Source:HGNC Symbol;Acc:25828]
Genomic region (view in browser)
>retro_ecab_1074
AGTTCAGAGATGAGTGATTTATTTCTTGAAGTCCAGATTCAGAATATTTCATCTTCAACT
GTCTTTATACAAAAGGTTTCCTTAAAGCCATCTGAAATGTACACTGGGGCAGAATTAAAT
ACCGTTAATCAGGCTGGAGAAGATGAGTGCACCTTTGGAACGAGACCAATTTTGCAGTCA
ATGGAAGGACGCCAGTATTTATACCACCTTCAGCTCAAGCAGGAATTTTCAGAGAAAGCT
GGTACCATTAGGGGACTAACAGAAATGGGAAAATTGGACATAGAGTGGAAAAGAAATCCA
GGTGAAATGGCAATACTACGGACAATCCAACTTGAAAGAGAGGCCCTAGTTTATGGAAAC
ATGAAGCTATCTTTGGAGACAATCCCAGATACTGTAATTCTAGAAGAGCCTTTTCATATT
ACCTGTAAGATAACAAACTGTGGTGATAGGAAAATGAAATTGTTTTTGAAGACGTGTGAT
ACAGATTCTATTCGTTGGTGTGGAAGTTCAGGAAGGTATCTTGGAAAGCTGCCACCAAAT
TCATCTCTCCACTTTACTCTGACACTACTGTCCTTAAAACTGGGCCTGCAAAGTGTCTCT
GGCATATGGATAACAGAAAAGTTATTAAAGAAAACATATGTCTGTGATGATGTTGCAAAA
GTCTGTGTAATATCTTCCATGATTAAAATGAAAAGC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.71 |
Parental protein coverage
Changes in the retrocopy sequence
