RetrogeneDB ID:
retro_ecab_1074
Organism:
Horse ( Equus_caballus )
Location:
X:56927347-56928043 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.21 %
Coverage:
57.71 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TRAPPC13
Parental gene aliases:
No gene alias available
Parental gene description:
trafficking protein particle complex 13 [Source:HGNC Symbol;Acc:25828]

Genomic region (view in browser)





>retro_ecab_1074
AGTTCAGAGATGAGTGATTTATTTCTTGAAGTCCAGATTCAGAATATTTCATCTTCAACT
GTCTTTATACAAAAGGTTTCCTTAAAGCCATCTGAAATGTACACTGGGGCAGAATTAAAT
ACCGTTAATCAGGCTGGAGAAGATGAGTGCACCTTTGGAACGAGACCAATTTTGCAGTCA
ATGGAAGGACGCCAGTATTTATACCACCTTCAGCTCAAGCAGGAATTTTCAGAGAAAGCT
GGTACCATTAGGGGACTAACAGAAATGGGAAAATTGGACATAGAGTGGAAAAGAAATCCA
GGTGAAATGGCAATACTACGGACAATCCAACTTGAAAGAGAGGCCCTAGTTTATGGAAAC
ATGAAGCTATCTTTGGAGACAATCCCAGATACTGTAATTCTAGAAGAGCCTTTTCATATT
ACCTGTAAGATAACAAACTGTGGTGATAGGAAAATGAAATTGTTTTTGAAGACGTGTGAT
ACAGATTCTATTCGTTGGTGTGGAAGTTCAGGAAGGTATCTTGGAAAGCTGCCACCAAAT
TCATCTCTCCACTTTACTCTGACACTACTGTCCTTAAAACTGGGCCTGCAAAGTGTCTCT
GGCATATGGATAACAGAAAAGTTATTAAAGAAAACATATGTCTGTGATGATGTTGCAAAA
GTCTGTGTAATATCTTCCATGATTAAAATGAAAAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.71

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NSVTDEVFLEAQIQNITTSPMFMEKVSLEPSIMYNVAELNSVNQAGECVTTFGSRAYLQPMDTRQYLYCLKPKKEFAEKAGIIKGVTVIGKLDIVWKTNL
.S.....FLE.QIQNI..S..F..KVSL.PS.MY..AELN.VNQAGE...TFG.R..LQ.M..RQYLY.L..K.EF.EKAG.I.G.T..GKLDI.WK.N.
Retrocopy
SSEMSDLFLEVQIQNISSSTVFIQKVSLKPSEMYTGAELNTVNQAGEDECTFGTRPILQSMEGRQYLYHLQLKQEFSEKAGTIRGLTEMGKLDIEWKRNP


Parental protein
GERGRLQTSQLQRMAPGYGDVRLSLEAIPDTVNLEEPFHITCKITNCSERTMDLVLEMCNTSSIHWCGISGRQLGKLHPSSSLCLALTLLSSVQGLQSVS
GE...L.T.QL.R.A..YG...LSLE.IPDTV.LEEPFHITCKITNC..R.M.L.L..C.T.SI.WCG.SGR.LGKL.P.SSL...LTLLS...GLQSVS
Retrocopy
GEMAILRTIQLEREALVYGNMKLSLETIPDTVILEEPFHITCKITNCGDRKMKLFLKTCDTDSIRWCGSSGRYLGKLPPNSSLHFTLTLLSLKLGLQSVS


Parental protein
GLRLTDTFLKRTYEYDDIAQVCVVSSAVKVES
G...T...LK.TY..DD.A.VCV.SS..K..S
Retrocopy
GIWITEKLLKKTYVCDDVAKVCVISSMIKMKS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide