RetrogeneDB ID:
retro_ecab_1075
Organism:
Horse ( Equus_caballus )
Location:
X:59751794-59752173 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.69 %
Coverage:
73.99 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
PTP4A1
Parental gene aliases:
No gene alias available
Parental gene description:
protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]

Genomic region (view in browser)





>retro_ecab_1075
AACTGCCCAGCTTCTGTGGATGTCGAACAGAACATGAGATTCCTTATCACACACAATGTA
ACCAATGCAACTTTAAGCAGATTTATAGAGGAACTTAGGTATGCAGTTACCGTAAGAGTA
AGAGGAGAAAAAGCACATTGCTACACTGTTCTTTTGGAGAAAAAAAGTCACACATGTTCT
GGATTGGTCTTTGGATGATGGTATCCCACTGTCCAGCCGGATTGTTGATGACTGGCTAAG
GCTTATATAATTTCAGTTTAATGAAGAACTTGGTTGTTTTATTGCTGTTTACTGTGTTGC
AAGTCTTGGGAGAGCTACAGTGCTTGCTGCTCTAGCATTAATTGAAGGTAAGGTAGAATG
AAACATGAAAGTACAGTAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEG-IHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVH
N.PA.V.V...NMRFLITHN.TNATL..FIEEL..Y.VT..VR...A...T.L.EK....HVLDW..DDG.P.S..IVDDWL.L....F.EE.GC.IAV.
Retrocopy
NCPASVDVE-QNMRFLITHNVTNATLSRFIEELR-YAVTVRVRGEKAHCYTVLLEKKS\THVLDWSLDDGIPLSSRIVDDWLRLI*FQFNEELGCFIAVY


Parental protein
CVAGLGRAPVLVALALIEGGMKYEDAVQF
CVA.LGRA.VL.ALALIEG.......VQ.
Retrocopy
CVASLGRATVLAALALIEGKVE*NMKVQY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide