RetrogeneDB ID:
retro_ecab_1076
Organism:
Horse ( Equus_caballus )
Location:
X:61525033-61525555 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.22 %
Coverage:
88.44 %
Frameshifts:
4
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1076
AAGAGTGAAGAAATCCTATAGTACATAGCAGGTTTGATAAGAAGAAAAAAATGAATAATT
AGTGTACCAGACAGAGAGGAGAAGAAGAAAGGGAGCAGAGAGTTTATTTAAAGAAATAAT
AGCTGAGAACTTCTTAAACCTGGAGAAGGGCTTAGACATACAAGTCAGTGAAGCTAATAG
AACACATTTTTATCTCAATGCAAAAAGACCTTCTCCAAGACACAGTATAAGGAAGCTGTG
AAAAATCAATGATAAAGAAAGACTCTTAGAGGAAGCTGGGGGCTGGGGTGGAATAACCTA
CAAAGGAACCTCCATTAAGCTATCAGTGGATTTCTTAGCAGAAACTCTACATTTATGAGA
AAATGGAATGCTATATTAAAGTGTTGAAAGATGAAAATTACCAGCCATAAATACTTGACC
TGACAAAATTATCCTTCATAAATGAAAAATAAAGGCTTTTCCAGACAAACAAAAGCTGAC
GGAATTCACCATTACTAGACCTCCTTGAAGGAAATGCTGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RSEDIFQEIYNPIRKRNIRIISIPTGEE-RQNRRESLFKEIITENFLNLGKGLEIQVKEANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKI
.SE.I...I...IR.....IIS.P..EE.R....ESLFKEII.ENFLNL.KGL.IQV.EANRT..Y.N..RPSPRH...KL.K...KE....EA.....I
Retrocopy
KSEEIL*YIAGLIRRKK*-IISVPDREE\RRKGAESLFKEIIAENFLNLEKGLDIQVSEANRTHFYLNAKRPSPRHSIRKL*KINDKERLLEEAGGWGGI


Parental protein
TYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQ-DKQKLREFITTRPP-LQEMMK
TYKG..I.LS.DF..Q...........IK.LK..NY.P.IL...KLSF........FQ.DKQKL.EF..TRPP.L.EM.K
Retrocopy
TYKGTSIKLSVDFL\QKLYIYEKMECYIKVLKDENYQP*ILDLTKLSF-INEK*RLFQ/DKQKLTEFTITRPP/LKEMLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide