RetrogeneDB ID:
retro_ecab_1077
Organism:
Horse ( Equus_caballus )
Location:
X:62748730-62749465 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.73 %
Coverage:
86.83 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1077
AGTCTACCTGATAAACAGTAAAAACTAATAGTCATAAGGATGCTCACTGATCCTGGGAGA
AAAATAGATGAACACAGTGAGAACTTCAACAAAGAACTGGAAAACATGAAAAAGAACCAA
TCAGAACTGAAGAATGCAATAATGGAAATGAAAAATTCACTAGAGGGAATCAATAGGAGA
GTAGATGACACAGAAGACTGGATCAATAATCTGGATGAAAGAGTTGAGGAAATCACCCAA
ACTGAACCAAAAAAAAGAAAAAAGAGCTAAAAAGAATGAGGGAGATCTAAGAGACCTCTG
GAACAACATCAAGTATACTAACATCTGCATTATAGGTGTCCCAGAAGGAGAAGAGACAGA
CAAAAAGGCAGAGAACTTATTTGAAGAAATAATAGTTGAAAACTTCCCTAACCTGGGGAA
CGAAACAGACATCCAGGTACAGGAAGCACAGAGGGCAGCAAACAAGATGAACCCAAAGAG
GCCCACACCAAGACACATTACAATTAAAATGTCAAGAATTAAAGAGAGAGAGTATCCTAA
AATCTGCAAAAGAAAGGCTACAAGTTGCACACACAAAAAAAAAACCCTCATAAGGCTGTC
AGCTGACTTCTCAGCAGAAACCTTATAGGCTAGAAGGGAGTGGCATGACATACTCATGTG
CTGAAAGAAAAAACACTACGGCCAAGAATATTCTATTTGGCAAGGTTATTATTCAGAATA
GAAGGAGAGATAGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NLPDKEFKQKGIRMLIDLGRRMDKHSENVNKELENIKKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLDEKLEEISQ-VNQVKEKTILKNDSKIKEL
.LPDK..K...IRML.D.GR..D.HSEN.NKELEN.KK.QSE.K..I..MKNSLEG.N.RVDDTE.WI..LDE..EEI.Q..N.........N......L
Retrocopy
SLPDKQ*KLIVIRMLTDPGRKIDEHSENFNKELENMKKNQSELKNAIMEMKNSLEGINRRVDDTEDWINNLDERVEEITQ\LNXXXXXXXXXNEGDLRDL


Parental protein
WDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMSKIKDKERILKAARERPEVTYKGKP-IRL
W.NIK..NI.II.VP.GEE..K..ENLFEEII.ENFPNL..ETDIQVQE.QRA.NK..PKRPTP.HI.IKMS.IK..E......R.....T......IRL
Retrocopy
WNNIKYTNICIIGVPEGEETDKKAENLFEEIIVENFPNLGNETDIQVQEAQRAANKMNPKRPTPRHITIKMSRIKEREYPKICKRKATSCTHXXXXLIRL


Parental protein
SADFSAETLQATREWHDIFK-VLKGKNLQPRIFYPSRSSFRMEGEIK
SADFSAETL.A.REWHDI...VLK.K.L.PRIFY..R..FR.EGEI.
Retrocopy
SADFSAETL*ARREWHDILM/VLKEKTLRPRIFYLARLLFRIEGEIE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide