RetrogeneDB ID:
retro_ecab_1078
Organism:
Horse ( Equus_caballus )
Location:
X:67740305-67740953 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
68.66 %
Coverage:
82.51 %
Frameshifts:
0
Stop codons:
8
Parental gene:
Parental gene symbol:
PSMA1
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 1 [Source:HGNC Symbol;Acc:9530]
Genomic region (view in browser)
>retro_ecab_1078
ATTGCATTGAAGAGAACACAGTAAACACTTGCGGCTCATCAGAAAAAAGTTCTCCACATT
GACTAACATCTTGGTGTCTCAGTTGTGGGGCTCACTGCTGATGCTAGACTGTTATATAAT
TTTATGCACCAGGACTACTTTGATTCCAGATTAGCAACTGACAGGCTACTTCTTGTGTCT
CATCTTATATCTCTAATTAGAAGCAAGACTCAGATACTAAGACAACAATATGGCCAGAGT
CCATATGGTGTTGGCCTACTTATTGCTGGTTATGATGTTATGGGCCCTCACATTTTCCAA
ACCTGCCCATCTGCTAACTAATTTGATTGCAGACCTATGTCCATTGGAGCCCATTCTTAA
TCAGCCTATACTAACTTAAAGAGATATATGTCTGAGTTTATGGAGTGAAATTTAAATGAA
CTGGTCAAACATAGCCTATGTGCCTTAAGAGAGACACTTCGTGCAGAGCAGGCCCTAACT
ACAAAGAAGGTTTCCATTGGAATTTTTGGTAAAGACTTCTAGTTTATGACCTATGATGAT
GATAATATGTCCAGCATTCATGGGCAGTCTTAAAGACCACAGAGAATGGCACAGCCTGTT
CAACTTGCTGATGAACCTGAAGAAAAGGCTAATTAATCAATAGAACAT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
