RetrogeneDB ID:
retro_ecab_1079
Organism:
Horse ( Equus_caballus )
Location:
X:69842614-69843400 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.21 %
Coverage:
70.4 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
SH3GLB2
Parental gene aliases:
No gene alias available
Parental gene description:
SH3-domain GRB2-like endophilin B2 [Source:HGNC Symbol;Acc:10834]

Genomic region (view in browser)





>retro_ecab_1079
GTGCCACTGTGGCCCAACCCCAGTGCCCGAGTGGAGGAGTTTCCATATGAGAAGCTAGAC
AGGAAGCTGACTTTGTGGGTCACCAATATGGAACTGCTGCATCAGTCCATGTCAGAGATG
GCCAGTGGGCTGGGCCCCACTGCTACCTAGGGGAAGACATTGATCAAGGTGGCAGAAACT
GAAAAGTGCCTGGGAGATACAGAAGATTTTATCCTCATAGCCCCCACCAACTTCCTCATG
TCCCAGTGCAACTTCCAAGAAGGGGGCTGGAAGATGATTTCCAAGGAGGGGTGGCTCCTC
CAAAACCTGTGTCTGGACTTGAATGCCTGCAAAGCACTCCTGAAGAAGGCCAAGGCTGCA
GAAGCCAAAGCCACAATGGTGCTTGAATTTCAGGAGACTTGACCTTGTAATTAAATTCTC
TCCAGCAGCGCCTCCCTGCTTTGGAATGATGAGGTGGACAAGACTGAGCAGGAGCTCCAA
GTAGCCCCAAAGGAGGTCGACCAGCAGGCAGAAGTGACCAGTCTCCTGCTGGAGGGAATC
AGCTGCATTCACATGAAGCATCTTCGTTGCCTCTGTGAGTTCCTAGAGTCTCAGACAACT
TATTACGTGCAGTGCTACTGCTGCATGCTGGACTTACATAAACAGCTGGACAGATTTCCA
GGCACCTTCATGGGTACAACAGAACCCACCTACCTGCCCCTGAGCAGCAAGTCACCCACC
ACCACAGCTACTGTGCCTGTGGTACCCTCTGTGGCTGGCCTGGCCTCTTTGGGGGAACCT
GCTCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VLLQPNPSARVEEFLYEKLDRKVPSRVTNGELLAQYMAEAASELGPTTPYGKTLVKVAEAEKRLGAAERDFIHTASINFLTPLRNFLEGDWKTISKERRL
V.L.PNPSARVEEF.YEKLDRK....VTN.ELL.Q.M.E.AS.LGPT...GKTL.KVAE.EK.LG..E.DFI..A..NFL....NF.EG.WK.ISKE..L
Retrocopy
VPLWPNPSARVEEFPYEKLDRKLTLWVTNMELLHQSMSEMASGLGPTAT*GKTLIKVAETEKCLGDTE-DFILIAPTNFLMSQCNFQEGGWKMISKEGWL


Parental protein
LQNRRLDLDACKARLKKAKAAEAKATTVPDFQETRPRNYILSASASALWNDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVESQT
LQN..LDL.ACKA.LKKAKAAEAKAT.V..FQET.P.N.ILS.SAS.LWNDEVDK.EQEL.VA..E.D.QAEVT.LLLEGIS..H..HLRCL.EF.ESQT
Retrocopy
LQNLCLDLNACKALLKKAKAAEAKATMVLEFQET*PCN*ILSSSASLLWNDEVDKTEQELQVAPKEVDQQAEVTSLLLEGISCIHMKHLRCLCEFLESQT


Parental protein
TYYAQCYRHMLDLQKQLGRFPGTFVGTTEPTSPPLSSTSPTTTAATMPVGPSVAGLGPPGEAAL
TYY.QCY..MLDL.KQL.RFPGTF.GTTEPT..PLSS.SPTTT.AT.PV.PSVAGL...GE.AL
Retrocopy
TYYVQCYCCMLDLHKQLDRFPGTFMGTTEPTYLPLSSKSPTTT-ATVPVVPSVAGLASLGEPAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide