RetrogeneDB ID:
retro_ecab_108
Organism:
Horse ( Equus_caballus )
Location:
6:18805966-18806548 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
100.0 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_108
ATGGCGTGCGGGGCGACGTTGAAGCGGCCCATGGAGTTCGAGGCGGCGCTGCTGAACCCC
GGGTCCCCGAAGCGGCGGCGCTGCGCCCCCCTGCCCGGCCCCACTCCGGGCCTCAGGCCC
CCCGACGCCGAGCCGCCGCCGCCGCTGCTCCAGACGCAGACCCCGCCGCCGGCCCTGCAG
CAGCCCGCCCCGCCCGGCAGCGAGCGGCGCCTTCCAACTCCGGAGCAAATTTTTCAGAAC
ATAAAACAAGAATATAGTCGTTATCAGAGGTGGAGACATTTAGAAGTTGTTCTTAATCAG
AGTGAAGCTTGTACTTCGGAAAGTCAGCCTCACTCCGCAGCACTCGCAGCACCTAGTTCG
CCAGGTTCCTCCTGGATGAAGAAGGACCAGCCCACCTTTACCCTCCGACAAGTTGGAATA
ATATGTGAGCGTCTCTTAAAAGACTATGAAGATAAAATTCGGGAGGAGTATGAGCAAATC
CTCAATACCAAACTAGCAGAACAATATGAATCTTTTGTGAAATTCACACATGATCAGATT
ATGCGACGATATGGGACAAGGCCAACAAGCTACGTGTCCTGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 2.32
SRP021940_cerebellum 3.93
SRP021940_embryo 3.35
SRP021940_placental_villous 1.43
SRP021940_synovial_membrane 1.72
SRP021940_testis 12.52

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LLQTQTPPPALQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEACTSESQPHSAALAAPSSPGSSWMKKDQPTFTLRQVGIICERLLKD
LLQTQTPPPALQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEACTSESQPHSAALAAPSSPGSSWMKKDQPTFTLRQVGIICERLLKD
Retrocopy
LLQTQTPPPALQQPAPPGSERRLPTPEQIFQNIKQEYSRYQRWRHLEVVLNQSEACTSESQPHSAALAAPSSPGSSWMKKDQPTFTLRQVGIICERLLKD


Parental protein
YEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS
YEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS
Retrocopy
YEDKIREEYEQILNTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide