RetrogeneDB ID:
retro_ecab_1080
Organism:
Horse ( Equus_caballus )
Location:
X:69996784-69997012 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.16 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SNRPG
Parental gene aliases:
No gene alias available
Parental gene description:
small nuclear ribonucleoprotein polypeptide G [Source:HGNC Symbol;Acc:11163]

Genomic region (view in browser)





>retro_ecab_1080
ATGAACAAAGCTCAGCCTCCTGAGTTGAAAAAATTTATGGACAAGAAGTTATCATTGAAA
TTACATGGTGGCAGACATGTCCAGGGAATATTGTGGGGATTTGATCCCTTTGTGAATCTT
GTGATAGACGAATGTGTGGAGATGACAACTAGTGGACAACAGAACAATATTGGAATGGTG
GTAATACAAAGAAATGGTATCATCATGTTAGAAGCCTTGGAACGAGTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV
M.KA.PPELKKFMDKKLSLKL.GGRHVQGIL.GFDPF.NLVIDECVEM.TSGQQNNIGMVVI..N.IIMLEALERV
Retrocopy
MNKAQPPELKKFMDKKLSLKLHGGRHVQGILWGFDPFVNLVIDECVEMTTSGQQNNIGMVVIQRNGIIMLEALERV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide