RetrogeneDB ID:
retro_ecab_1083
Organism:
Horse ( Equus_caballus )
Location:
X:76789559-76789919 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.2 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
RPL35
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L35 [Source:HGNC Symbol;Acc:10344]

Genomic region (view in browser)





>retro_ecab_1083
ATGGCCAAGAGTAAGGCCAGAGACCTTCCTGGCAAGAAGAAGTAGGAGCTGCTGAAACAA
CTGGATGACTGAAGGTAGAGCTGTCACAGACGAACGTAGCCAAAGTAACAGGCCGTGTGG
CGTCTAAGCTCTTCAACATTAAAGTTGTTCATGAATCCATCACCAGCATTCTCACTGTCA
TTAACCAGACTCGCAAGGAGAACCCTCTAAAGGGCAAGAAGTACAAGGCTCTGGATCTAT
GGCCCAAGAAAACGCATGCCTTGCCTCGCTGATTCAACAAGCACGAGGAGAAGCTTGAAA
ACCAAGAAACAGGAGTGAAAGGAAAGGCTGCACCCACTGCGGAAGCACACAGTCAAGGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAKIKARDLRGKKKEELLKQLDD-LKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHE
MAK.KARDL.GKKK.ELLKQLDD.LKVELSQ..VAKVTG..ASKL..I.VV..SI...LTVINQT.KEN..K...GKKYK.LDL.PKKT.A..R..NKHE
Retrocopy
MAKSKARDLPGKKK*ELLKQLDD/LKVELSQTNVAKVTGRVASKLFNIKVVHESITSILTVINQTRKENPLK---GKKYKALDLWPKKTHALPR*FNKHE


Parental protein
E-NLKTKKQQRKERLYPLRKYAVKA
E..LKTKKQ..KERL.PLRK..VKA
Retrocopy
E\SLKTKKQE*KERLHPLRKHTVKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide