RetrogeneDB ID:
retro_ecab_1084
Organism:
Horse ( Equus_caballus )
Location:
X:79834898-79835268 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.98 %
Coverage:
51.03 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
ATP1B3
Parental gene aliases:
No gene alias available
Parental gene description:
ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806]

Genomic region (view in browser)





>retro_ecab_1084
TGCAGTGGTGTGGATGACCCTGAGTTTGGCTACTCCAGAGGAAAATCTTGTATTCTTGTG
AAAATGAGCAGAATAATTGGATTAAAGACTCAAGGAGAACCAATGATACAATGTATTTCA
AAGGATGGAAACACACAACTCTATCAACTTATCCTCCCAATGGAATTATAGACTTAAAAT
ATTTTCCATATTATGGGAAAAAACTGCATGTGAAGTATCCACAGCCATTAGTTGCTGTCC
AGGTTACCTGTGATACTAGTAGTACTATATAAGAAGTAAGAGTAGAGTGCAAGATTGACG
GCTTGCCCAACCTAAAAACCAGGACGATCGTGACAAGTTGTTAGGACGAGTTGTGTTCAA
AATCACAGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
CSGVEDPEFGYSTGNPCILVKMNRIIGLKPQGKPRINCISK-GEKTATLSTYPSNGTIDLKYFPYYGKKLHVRYLQPLVAVQVAFNTTSTGKEVTVECKI
CSGV.DPEFGYS.G..CILVKM.RIIGLK.QG.P.I.CISK.G.K..TLSTYP.NG.IDLKYFPYYGKKLHV.Y.QPLVAVQV...T.ST..EV.VECKI
Retrocopy
CSGVDDPEFGYSRGKSCILVKMSRIIGLKTQGEPMIQCISK/GWKHTTLSTYPPNGIIDLKYFPYYGKKLHVKYPQPLVAVQVTCDTSSTI*EVRVECKI


Parental protein
DGSPNL-RNQDDRDKFLGRVVFKITM
DG.PNL..NQDDRDK.LGRVVFKIT.
Retrocopy
DGLPNL/KNQDDRDKLLGRVVFKITV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide