RetrogeneDB ID:
retro_ecab_1086
Organism:
Horse ( Equus_caballus )
Location:
X:86305529-86306363 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
55.94 %
Coverage:
84.68 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_1086
TATGATTCTACCTATGAAAAATTCAACAGCACCGTCAAGGTTGAAAAGGAAAGCTTGCCA
ATGATAGGAATCCCATCTCTATCTTCTAGTGGTGAGATATTACTAACATCAAATGGAATG
ATTCTGGTGTTGAATATGCTGTGGAGTCCACTAGTGTCTTCCCTCTCTTGGAGAAGGTGG
GAGCTTACTAGAGAGTTGGAGGCTCATCATCTCTTCCCCTTCTGCAGATGTCCCCACGTT
TGTGATGGAAGGGAATCATAAGAGCTTTGATCACTACCTCAACATTATCAGCATTGCCTC
CTGCACCACGAACTGCTTGGCACCCTGCTCAAGGTTACTTATCCATGACAACTTTGGGGT
CATGGAGACACTCAGTATCACTGTTCACATCACTTCCACCCTGAAAAATGTGGATGGCCC
CTCTGGAAAACCATGGCATATTGGTGATGGTGCCACTCAGATCATCATCCCTGCAAACAC
TGACACCATCAAGGCTGTGGGCAAGGTCATTCCTGAGCTGAATGAGAATCTCATTGGCAT
AATCTTCTGTGTCTCTACCTGCAACATATCTGTCATGGATCTGACATGAATTCTGGAGAA
AGTGGACAAATATGGTGACATCAAGGTGTTAAGTAAGGCATTGAAGGACTCCTTGAAGGA
CATCCTGGCCTACACAGAGTACCAGATTGTCTTCTGTGAGCTTAACAGTGACACCTATCC
CTTTATCTTTGATGCTTGGGCCAGTATTGTCCTCAAGACCATGTTGTCAAACTCACTTAC
TGGTATGACAACAAATTTGGCTACAGGAACCACATAGTAGAATGCATGGTTCAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YDSTHGKFHGTVKAEH-GKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFT-TLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKI
YDST..KF..TVK.E..GKL......I.IF...D..NIKW.D.G.EY.VEST.VF...L...G..L.....R.IIS.PSAD.P.FVM..NH...D..L.I
Retrocopy
YDSTYEKFNSTVKVEK/GKLANDRNPISIF*W*DITNIKWNDSGVEYAVESTSVFP/SLGEGGSLLESW--RLIISSPSADVPTFVMEGNHKSFDHYLNI


Parental protein
VSNASCTTNCLAPLAKV-IHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDL
.S.ASCTTNCLAP.....IHD.FG..E.L..TVH.IT.T.K.VDGPSGK.W..G.GA.Q.IIPA.T...KAVGKVIPELN..L.G..F.V.T.N.SV.DL
Retrocopy
ISIASCTTNCLAPCSRLLIHDNFGVMETLSITVH-ITSTLKNVDGPSGKPWHIGDGATQIIIPANTDTIKAVGKVIPELNENLIGIIFCVSTCNISVMDL


Parental protein
TCRLEKAAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIAL-NDHFVKLISWYDNEFGYSNRVVDLMAH
T..LEK..KY..I.KV...A....LK.IL.YTE.Q.V.C..NSDT....FDA.A.I.L..DH.VKL..WYDN.FGY.N..V..M.H
Retrocopy
T*ILEKVDKYGDI-KVLSKALKDSLKDILAYTEYQIVFCELNSDTYPFIFDAWASIVL/QDHVVKLTYWYDNKFGYRNHIVECMVH


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide