RetrogeneDB ID:
retro_ecab_1086
Organism:
Horse ( Equus_caballus )
Location:
X:86305529-86306363 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
55.94 %
Coverage:
84.68 %
Frameshifts:
3
Stop codons:
3
Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]
Genomic region (view in browser)
>retro_ecab_1086
TATGATTCTACCTATGAAAAATTCAACAGCACCGTCAAGGTTGAAAAGGAAAGCTTGCCA
ATGATAGGAATCCCATCTCTATCTTCTAGTGGTGAGATATTACTAACATCAAATGGAATG
ATTCTGGTGTTGAATATGCTGTGGAGTCCACTAGTGTCTTCCCTCTCTTGGAGAAGGTGG
GAGCTTACTAGAGAGTTGGAGGCTCATCATCTCTTCCCCTTCTGCAGATGTCCCCACGTT
TGTGATGGAAGGGAATCATAAGAGCTTTGATCACTACCTCAACATTATCAGCATTGCCTC
CTGCACCACGAACTGCTTGGCACCCTGCTCAAGGTTACTTATCCATGACAACTTTGGGGT
CATGGAGACACTCAGTATCACTGTTCACATCACTTCCACCCTGAAAAATGTGGATGGCCC
CTCTGGAAAACCATGGCATATTGGTGATGGTGCCACTCAGATCATCATCCCTGCAAACAC
TGACACCATCAAGGCTGTGGGCAAGGTCATTCCTGAGCTGAATGAGAATCTCATTGGCAT
AATCTTCTGTGTCTCTACCTGCAACATATCTGTCATGGATCTGACATGAATTCTGGAGAA
AGTGGACAAATATGGTGACATCAAGGTGTTAAGTAAGGCATTGAAGGACTCCTTGAAGGA
CATCCTGGCCTACACAGAGTACCAGATTGTCTTCTGTGAGCTTAACAGTGACACCTATCC
CTTTATCTTTGATGCTTGGGCCAGTATTGTCCTCAAGACCATGTTGTCAAACTCACTTAC
TGGTATGACAACAAATTTGGCTACAGGAACCACATAGTAGAATGCATGGTTCAC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
