RetrogeneDB ID:
retro_ecab_1087
Organism:
Horse ( Equus_caballus )
Location:
X:93294181-93294488 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.84 %
Coverage:
56.42 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
ARL5A
Parental gene aliases:
No gene alias available
Parental gene description:
ADP-ribosylation factor-like 5A [Source:HGNC Symbol;Acc:696]

Genomic region (view in browser)





>retro_ecab_1087
ACATTTACTCTACTAACAGAGTTTGTAACAGTTGCTGTGGACAGTACAGACAGAGAAAGA
ATTTCTGTAACTGGAGAAGAGTTCTATAAAATGTTAGCACGTGAGAACTTAAGGGAAGCT
GGATTGTTGATTTTTGCTGATAAATGAGATGCTAAAGAATGCTTGACTATAGCAGAAGTC
TCCCAGTTTTTAGAACTGACTTCCATTAAAGATCCCCAGTGACATATCCAGGCAGGCATG
CTCTGTTCTTACTAGTGAGGGACTATGCCAAGGACTTGAATGGATGATTTCACGACGTGA
GATTAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA-CCA-LTGEGLCQGLEWMMSRL
T....TEFV.V.VDSTDRERISVT.EE.YKMLA.E.LR.AGLLIFA.K.D.KEC.T.AE.SQFL.LTSIKD.Q.HIQA..C..LT.EGLCQGLEWM.SR.
Retrocopy
TFTLLTEFVTVAVDSTDRERISVTGEEFYKMLARENLREAGLLIFADK*DAKECLTIAEVSQFLELTSIKDPQ*HIQA\ACSVLTSEGLCQGLEWMISRR


Parental protein
KIR
.I.
Retrocopy
EIK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide