RetrogeneDB ID:
retro_ecab_1088
Organism:
Horse ( Equus_caballus )
Location:
X:96037661-96037910 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.12 %
Coverage:
59.03 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
CCDC58
Parental gene aliases:
No gene alias available
Parental gene description:
coiled-coil domain containing 58 [Source:HGNC Symbol;Acc:31136]

Genomic region (view in browser)





>retro_ecab_1088
TTGGTAATGGCTCACGTGAATGGAGACGGTGTCATAAATTGTATAGCTCAGACCCTCGCA
GTAGTAAAAACCTCTTAGGAAGGGAGAGAGAAGAATTTGGACCATTTAACGTGAATCGAA
CTAGTTGGAAAAGAATAGACAATTGAAATGGTTGCAGTCAGAACTGACGTTGAAGAAGTG
GTAAATGACAGGAGATGGGAGATATATAGTGAACTCTTACAAATTCACTTCAAGCCTCTA
AAGAATGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LMEAHASRDRVIKNCIAQTSAVVKHLREEREKNLDDLTLLKQLRKEQTKLKWMQSELNVEEVVNDRSWKVFNERCRIHFKPPKNE
L..AH...D.VI.NCIAQT.AVVK...E.REKNLD.LT......KE.T..........VEEVVNDR.W....E...IHFKP.KNE
Retrocopy
LVMAHVNGDGVI-NCIAQTLAVVKTS*EGREKNLDHLT*IELVGKE*T-IEMVAVRTDVEEVVNDRRWEIYSELLQIHFKPLKNE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide