RetrogeneDB ID:
retro_ecab_1089
Organism:
Horse ( Equus_caballus )
Location:
X:98352770-98353589 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.71 %
Coverage:
93.47 %
Frameshifts:
4
Stop codons:
8


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1089
AGACAAAGGAATATATTCCAAGTAAGGTAACAGGACAAAACCCCAGAAAAGGAACTAAAT
GGAAACAGAGATAAACAATCTACCCGAAAAAGAGTACAAACTAATAGTCATAAGGATGCT
TACTGATCTTTGGAGAAGAATGGATGAACTCAGTGAGAACTTCAACAAAGAATTGGAAAA
TATAAAGAACCAATCAGAAATGAAGAATACAAAAATGGAAATGAAAAAATCACTTGAGGG
AATCAATAGCAGAGTACATGATATAGAAGAACAGATCAGCGAGCTGGATGAAAAACTAAA
GGAAATCATCCAAGCTGAATAGAAAAAAGAATTAAAAAGAATGAGGACAGTCTAAGGGAC
CTCTGGGATGACATCAACTGAACTAACATCCGTATTATAGGTGTCCCAGAGGGAGAAGAG
ACAAAGGGCAGAGAATATGTTCAAAAACATAATAGCTTAAAAGTTTCCTAACCTAAGATA
AAAAACAGATGTCTAGGTACAGTAAGCACAGAGAGCACCAACCAAGATAAACCCAAAGAG
GACCACAGCAAGACATGTAATCATTAAAATTTCAAGAATTAAAGATAAAGAGAGAATCTT
AAAAGCCGCAAAAGAAAGGAAAAAAGCAACATACAAAGGAAACTCTGTACAGCTATGAGC
GGACTTCTCAGCAGAAACCTTACAGGCTAGAAGGAAGTGGCATGATACATTTAAAGTGCT
GAAAGGAAAAAATCTACAGCCAAGAATACTCTACCCAGCAAATTATCATTCAGAATGGAA
GGAGAGATAAAGAGTTTCCCACATAGGCAAAAACTAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELN-ETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKKQSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQR..FQV..QDKTPEKELN.ETEI.NLP.K..K..V...LTDL.RRMDE.SENFNKE....................LEG.NSRV.D.EE.IS.LDE.L
Retrocopy
RQRNIFQVR*QDKTPEKELN\ETEINNLPEKEYKLIVIRMLTDLWRRMDELSENFNKEXXXXXXXXXXXXXXXXXXXXLEGINSRVHDIEEQISELDEKL


Parental protein
EEVTQAEQIKEKM-KKTDSLRDLWDNIKCTKIRITGVPEEEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGRNK
.E..QAE..KE...K..DSLRDLWD.I..T.IRI.GVPE.E..KG.E......IA..FP.L....D..VQ.AQ.AP..INPKR.T.RH.I.KIS.....K
Retrocopy
KEIIQAE*KKELK/KNEDSLRDLWDDIN*TNIRIIGVPEGEETKGRE\MFKNIIA*KFPNLR*KTDV*VQ*AQRAPTKINPKRTTARHVIIKISRI-KDK


Parental protein
ERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLA-RSSFIMEGEIKCFPDKQKLK
ERILKAA.ER...TYKGNS..L.AD.SAETLQARRKWH..FKVL..K...PRILY.A...SF.MEGEIK.FP..QKLK
Retrocopy
ERILKAAKERKKATYKGNSVQL*ADFSAETLQARRKWHDTFKVLKGKNLQPRILYPA/KLSFRMEGEIKSFPHRQKLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide