RetrogeneDB ID:
retro_ecab_1093
Organism:
Horse ( Equus_caballus )
Location:
X:121567569-121568229 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.89 %
Coverage:
66.77 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1093
GAAGAAAGAGCTGTAGCTGAGGCCGAGGCTCCAGGTGACGAAGGAGCTGCAGGTGTGGCA
AGAGCCATCAACGAGGCAGCAGCCCGGAGCCAGCACTGGCGGCAGACGTTGCAGCCTCTG
CTCGATGCTATGGCCTACCGGGTACTGAGAAGGTTTTCTGGGGTGGAAGAGCCGGGCTGT
GGAGAAGAGTCTTTTGAGAGCGGGCTGCACCATGCCAACAACACGCTGTACCTGTGGCGC
CACATGTCAGAGAGGGAGAGGAGGAGGAGACTGGTGGAGAGCTTGGGTGGCCCCGTGCTG
GATCTCATGTGTGGCCTCCTGGAGGAAAATCCCGACACCCCTGCACAGGACTGCCTGGCC
GCGCTGGTGCAGGTGTTCGGGAACAAGGATGCCCAGATGACCGCACGGCTGAAGTTCCTG
ACTTGTGCGCAGAGGCCCCAGGAGGCTCTCTTTGCCTACGTGATGCGCCTGGAAGGCCTG
CTGCAGGCGGCCTTGGAGAAGGGGGCCATCCGGCCCGCCATCGCAGAGCAGCTGCGCGCC
AGGCAGGTGCTGATGCAGGCCCGGCCCAACGAGACGCTCGAGAACAAGCTGAGGAGGATG
CGTCTGGAGAGGAGGCCGCCTGGCTTCCTGGGGATGCTGCAGCTCATTCGGGAGACGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QRQAVAGRAEAPGEEGAAGPGVPAASEEEAAAARSQHWRQTLQSLLDAMAYRALRRFSGVEEPGCGEESFESWLHHANDTLYLWRHMSERERRSRLVESL
...AVA..AEAPG.EGAA..GV..A..E..AAARSQHWRQTLQ.LLDAMAYR.LRRFSGVEEPGCGEESFES.LHHAN.TLYLWRHMSERERR.RLVESL
Retrocopy
EERAVA-EAEAPGDEGAA--GVARAINE--AAARSQHWRQTLQPLLDAMAYRVLRRFSGVEEPGCGEESFESGLHHANNTLYLWRHMSERERRRRLVESL


Parental protein
GGPALDLICGLLEENPDTPVQDCLAALVQVFGSKDAQMTARLKFLTCAQRPQEALFAYVMRLEGLLQAALEKGAIRPAIADQLRARQVLMGARPNETLEN
GGP.LDL.CGLLEENPDTP.QDCLAALVQVFG.KDAQMTARLKFLTCAQRPQEALFAYVMRLEGLLQAALEKGAIRPAIA.QLRARQVLM.ARPNETLEN
Retrocopy
GGPVLDLMCGLLEENPDTPAQDCLAALVQVFGNKDAQMTARLKFLTCAQRPQEALFAYVMRLEGLLQAALEKGAIRPAIAEQLRARQVLMQARPNETLEN


Parental protein
KLRRMRLERRPPGFLGMLQLIRETE
KLRRMRLERRPPGFLGMLQLIRETE
Retrocopy
KLRRMRLERRPPGFLGMLQLIRETE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide