RetrogeneDB ID:
retro_ecab_1094
Organism:
Horse ( Equus_caballus )
Location:
X:123530934-123531279 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
92.17 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL30
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L30 [Source:HGNC Symbol;Acc:10333]

Genomic region (view in browser)





>retro_ecab_1094
ATGGTGGCCGCAAAGAAGATGAAAAAATCATTGGAGTCAATCAACTCTAGGCTTCAACTC
ATTATGAAAAGTGGAAAGTACGTGCTGGGGTACCAGCAGAGCCTGAAAATGACCAGACAA
GGCAAAGCGAAACTGGTCATCCTTGCAAACAACTGCCCAGCCTTGAGGAAATCTGAGATA
GAGTACTATACCATGTTGGCCAAAACTGATGTCCATCACTACAGTGGCAATAATATTGAA
TTGAGCACAGCACGTGGAAAATACTACAGAGTATGCACACTGGCTATTATTGATCCAGGT
GATTCTGATATCATTAGAAGCATGCCAGAACAGACTGGTGAAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPG
MVAAKK.KKSLESINSRLQL.MKSGKYVLGY.Q.LKM.RQGKAKLVILANNCPALRKSEIEYY.MLAKT.VHHYSGNNIEL.TA.GKYYRVCTLAIIDPG
Retrocopy
MVAAKKMKKSLESINSRLQLIMKSGKYVLGYQQSLKMTRQGKAKLVILANNCPALRKSEIEYYTMLAKTDVHHYSGNNIELSTARGKYYRVCTLAIIDPG


Parental protein
DSDIIRSMPEQTGEK
DSDIIRSMPEQTGEK
Retrocopy
DSDIIRSMPEQTGEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide