RetrogeneDB ID:
retro_ecab_1096
Organism:
Horse ( Equus_caballus )
Location:
X:5395748-5396693 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
88.96 %
Coverage:
70.38 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
AZIN1
Parental gene aliases:
No gene alias available
Parental gene description:
antizyme inhibitor 1 [Source:HGNC Symbol;Acc:16432]
Genomic region (view in browser)
>retro_ecab_1096
GACAGTGAAGTTGAATTGAAGAAAATTGCACGTAATCACCCAAATGCCAAGGTCTTACTA
CGTTTTGCAACAGAAGATAATATTGGAGATGAAGAGGGTAACGTGAAGTTTGGCACTACC
CCGAAGAACTGTAGGCATCTCTTGGAATGTGCTAAGGAACTTGGTGTCCAAATTATTGGG
GTTAAATTTCATGTTTCAAGTGCTTGCAAAGAATCTCAAGCACATGTACATGCTCTGTCT
GATGCTCGATGTATGTTTGACATGGCTGGAGAATTTGGCCTCACAATGAACATGTTAGAC
ATTGGTGGAGGCTTCACAGGAACTGCATTTCAGTTGGAAGAGGTTAATCATGTTATCAGC
CCTGTGTTGGATGTCTACTTTCCTGAAGGATCTGGCATTAAGATAATTTCAGAACCTGGA
AGCTACTATGTGTCTTCTGCATTTACACTTGCAGTTAATATCATTGCGAAGAAAGTTGTT
GAAAATGATAAATTATCCTGTGGAGTAGAAAAAACCAGAAGTGATGAGCCAGCCTTCATG
TATTTCATGAACGGTGGTGTTTATGGTTCTTTTGCAAGTAAACTGTTTGAGGACTTAAAT
ACCTTTCCAGAGGTTCCCAAGAAATACAAGCAAGATGAGCCTCTGTTTACAAGCAGCCTT
TGGGGTCCATCCTGTGATGAGCTTGATCAAATTATGGAAAACTGTCTTCTTCCTGAGCTG
AATGAGGGAGATTGGCTTATCTTTGATAACATGGGAGCAGATTCTTTCCATGACCCATCT
GCTTTTAATGATTTTCAGAGGCCAGCTATTTATTACATGATGTCATTTAGTAATTGGTCT
GAGATGCAAGATGCTGGGGTTACTTCAGACACAATGATGAAGAACTTCTTCTTTGTGCCT
TCTTGCATTCCGCTGAGCCAAGAAGACAGCTTTTCCACTGAAGCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.58 |
| SRP021940_cerebellum | 0.95 |
| SRP021940_embryo | 0.24 |
| SRP021940_placental_villous | 1.52 |
| SRP021940_synovial_membrane | 0.49 |
| SRP021940_testis | 0.89 |
Parental protein coverage
Changes in the retrocopy sequence
