RetrogeneDB ID:
retro_ecab_1099
Organism:
Horse ( Equus_caballus )
Location:
X:12833679-12834260 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
73.85 %
Coverage:
99.49 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
CHP1
Parental gene aliases:
No gene alias available
Parental gene description:
calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433]

Genomic region (view in browser)





>retro_ecab_1099
ATGGGGTCTCAGGCCTCGACGTTACTGCAGAAGGAAGAGCTCGAGGAAATCCAGTAGAAG
ACCCGCTTTTCCCACCACCAGATCAACCAGCTTTACAGCCGGTTCACCAGCCTGGACAAA
GGGGAGAACAGGGCCTTCAGCTAGGAAGATTTCCAGTGAATTCCAGAACTTGTCATCAAT
CCACTGGGGGACCAGCTCATCAGTGCCACCTTTCCAGAGGGAGAAGACCAAGTAAACTTC
CATGGAATCATAAAAACTTTGGCTCATTTCCAACCCACTGAAGATAATGCAAAGAGCAAA
GATAAGACTGGACCAGAACCACTCAACAGCCAAAGCAACAAACTGTACGTTGTTTTTCAA
CTATGTGATTTGGATAAAGATGACAAGATCTCTTGCTGTGAGTGTTCCAGGTGCTATGCA
AGATGGTTGGAGTGAATATCTCAGATGAGCAACTGAGCAGCATCACAGACAGGACCATCC
AGGTGGCTGATCAGGAAGCGGATGATGCCCTATCTTTCGCAGAGTTTGTTAAGGTTTTGG
AGAAGGTGGACGTAGAACAGAAAATGAGCATCTGATTTCTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.14
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.08
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGSRASTLLRDEELEEIKKETGFSHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFPEGEDQVNFRGFMRTLAHFRPIEDNEKSK
MGS.ASTLL..EELEEI...T.FSH.QI..LYSRFTSLDKGEN...S.EDFQ.IPEL.INPLGD..I.A.FPEGEDQVNF.G...TLAHF.P.EDN.KSK
Retrocopy
MGSQASTLLQKEELEEIQ*KTRFSHHQINQLYSRFTSLDKGENRAFS*EDFQ*IPELVINPLGDQLISATFPEGEDQVNFHGIIKTLAHFQPTEDNAKSK


Parental protein
DVNGPEPLNSRSNKLHFAFRLYDLDKDDKISRDE-LLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQKMSIRFL
D..GPEPLNS.SNKL...F.L.DLDKDDKIS..E...QVL..MVGVNISDEQL.SI.DRTIQ.ADQ..D.A.SF.EFVKVLEKVDVEQKMSI.FL
Retrocopy
DKTGPEPLNSQSNKLYVVFQLCDLDKDDKISCCE/VFQVLCKMVGVNISDEQLSSITDRTIQVADQEADDALSFAEFVKVLEKVDVEQKMSI*FL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide