RetrogeneDB ID:
retro_ecab_1099
Organism:
Horse ( Equus_caballus )
Location:
X:12833679-12834260 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
73.85 %
Coverage:
99.49 %
Frameshifts:
1
Stop codons:
4
Parental gene:
Parental gene symbol:
CHP1
Parental gene aliases:
No gene alias available
Parental gene description:
calcineurin-like EF-hand protein 1 [Source:HGNC Symbol;Acc:17433]
Genomic region (view in browser)
>retro_ecab_1099
ATGGGGTCTCAGGCCTCGACGTTACTGCAGAAGGAAGAGCTCGAGGAAATCCAGTAGAAG
ACCCGCTTTTCCCACCACCAGATCAACCAGCTTTACAGCCGGTTCACCAGCCTGGACAAA
GGGGAGAACAGGGCCTTCAGCTAGGAAGATTTCCAGTGAATTCCAGAACTTGTCATCAAT
CCACTGGGGGACCAGCTCATCAGTGCCACCTTTCCAGAGGGAGAAGACCAAGTAAACTTC
CATGGAATCATAAAAACTTTGGCTCATTTCCAACCCACTGAAGATAATGCAAAGAGCAAA
GATAAGACTGGACCAGAACCACTCAACAGCCAAAGCAACAAACTGTACGTTGTTTTTCAA
CTATGTGATTTGGATAAAGATGACAAGATCTCTTGCTGTGAGTGTTCCAGGTGCTATGCA
AGATGGTTGGAGTGAATATCTCAGATGAGCAACTGAGCAGCATCACAGACAGGACCATCC
AGGTGGCTGATCAGGAAGCGGATGATGCCCTATCTTTCGCAGAGTTTGTTAAGGTTTTGG
AGAAGGTGGACGTAGAACAGAAAATGAGCATCTGATTTCTT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.14 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.08 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
