RetrogeneDB ID:
retro_ecab_1100
Organism:
Horse ( Equus_caballus )
Location:
X:16774867-16775347 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
84.38 %
Coverage:
54.42 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
NPM1
Parental gene aliases:
No gene alias available
Parental gene description:
nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]

Genomic region (view in browser)





>retro_ecab_1100
ATGGAAGGTTCGATGGACATGGACATGAGCCCCTTGAGGCCTCAGAACTACCTTTTTGGT
TATGAACTAAAGGCTGACAAAGATGATCACTTTAGGGTGGATAATGATGAAAATGGGCAC
CAGTTATCTTTAAGAAAAGTCGGTTTAGGGGCTGGTGCAAAGGATGAATTGAACATTGTT
GAAGCAGAGGCAATGAATTACGAAGGGAGTCTAATTAAAGTAACACTGACAACTTTGAAA
ATGTCTGCACAGACAGCAGTTTCCCTTGGGGACTTTGAAATAACACCACCCGAGGTCTTA
TGATTGAAGTTTGGTTCAGGGCCTGTGCATATTAGTGGACAATGCTTAGTAGCTGTGGAG
GAAGATGCAGAGACAGAAGACGAAGAGGAGGAGGATGTGAAACTCCTTAGTACATCTGGA
AGGCATTCTGACCCTTGAAGTGGTAGCAAGTTTCCACAGAAAAAAGTAAAACTTGCTGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEDSMDMDMSPLRPQNYLFGCELKADKDYHFKVDNDENEHQLSLRTVSLGAGAKDELHIVEAEAMNYEGSPIKVTLATLKMSVQPTVSLGGFEITPPVVL
ME.SMDMDMSPLRPQNYLFG.ELKADKD.HF.VDNDEN.HQLSLR.V.LGAGAKDEL.IVEAEAMNYEGS.IKVTL.TLKMS.Q..VSLG.FEITPP.VL
Retrocopy
MEGSMDMDMSPLRPQNYLFGYELKADKDDHFRVDNDENGHQLSLRKVGLGAGAKDELNIVEAEAMNYEGSLIKVTLTTLKMSAQTAVSLGDFEITPPEVL


Parental protein
RLKCGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGKRSAPGSGSKVPQKKVKLAA
.LK.GSGPVHISGQ.LVAVEEDAE.EDEEEEDVKLLS.SG..S.P.SGSK.PQKKVKLAA
Retrocopy
*LKFGSGPVHISGQCLVAVEEDAETEDEEEEDVKLLSTSGRHSDP*SGSKFPQKKVKLAA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide