RetrogeneDB ID:
retro_ecab_1101
Organism:
Horse ( Equus_caballus )
Location:
X:18495456-18497640 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.52 %
Coverage:
93.07 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
SUPT20H
Parental gene aliases:
No gene alias available
Parental gene description:
suppressor of Ty 20 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:20596]

Genomic region (view in browser)





>retro_ecab_1101
ATGCAACACGCCTTAGAACGAGCTCTGGATCGCGCGGCGTGTGTCATCGAAAGTGCCCAA
CAGAGACCTCCTAAAAGGAAGTACGCGTCTAGAGGGGAAAAATCGGTCTATGAGAAACTG
TATGACATATATGTTGAAGAATGCGACAGAGAGCCTGAGGTTGCGGAGGAATTACGAAGC
AACGTGAACTTGCTAGAGAAGCTTGTTCAGAGAGAGTCGTTGTCGCGTTTAGTGGTCAAT
CTGCACCCAGGAGGGCAGGGATACTCGCTGATGCTCAGGGGAGAAAATGGCTCGTATTCG
GAGACCATTCGGCTGTCTTATGAAGAGGGGGAACTGCTCCAGTACTTGGATGCAGAAGAA
TTACCTCCTGTTTTGGTGGGTCTCCTGGAAAAATCTCAGGTGAACGTTTTTCACTGTGGA
TGCGTCATCGCAGAAATACGGGACTACAGGCAGTCCAGTGACGTGGAGGCCCCTGGTTAC
CAGAGCAGGTGCATTCTCTTACGACCAACCATGCAGACGTTAGCCTGCGACGTAGAGTCC
CTAACCAGCGACAGCCAGACATGGACCCAGGAGGACAAACTGTTGCTCGAGAGCCAGCTG
ATCTTAGCCACAGCTGAACCACTGTGTCTTGATCCTTCTGTGTCAGTAGCCTGCACTGCA
AACAGTCTGCTTTATAACAAACAAAAGATGAACACTGACCCAATGAAGCGCTGCTTCAAG
AGGTGCTCGAGCCCGGCTCTGAGTCGGCAGCAGGAGCTGTCTCATGGCCCACCTCCGCCC
GAGCTAACGGTACTGACTTCTTGCCAACCAAGCAAAGAGAGTAACGCAGGTGAGCAGTAT
GACCTCAAAATTTCTGGAGCAGGGAATTATGTGGATGTGTGGGAACAGAGACCCTGTGAC
TTGGCCGTACCTTCTGAAGTGGATGTGGAGAAATATGCTACAGGGAAGAAGTCCGTGAGC
TCTGATGACTCCCAGCCAACAGGCTGGCCAGCCCATGAAGTCAGAGATGATTCTGTATTT
GAATGGGAAGCAGGCGATCAGTACCGGGATACAAAGATGTTCTTCATGCGCTCGCTTAAT
GATCCACTTATCTCTGGGAAAGAAATGTCACCTAAAAAAGCCAGATATGAGAGACAGCTG
TCTCCCCCCCACCCCTCCAGAGGTGACCATTCAAAGAGTTTCATGCCTGGGTCGAAGACT
GATGCTGGGACGGTAGTCATTCGGCCCGAGGAATTGGTCCAGAAGAACAGCAGTTGTCCA
GTCAAGGTGTCACACAGCTCCAGTGGCTCAGCCAGTCTCAGCCCACTTTCTCCAGGGAAG
GAAACAGAACGGCCTAAGACCGTGCTGCTTCAGGCCTCAGTCCTGGGGGAGGAAGTCCAA
CCTCCACCGCCGCCCGTCACGCTGCCCTCGAGCTCAGGCACGAGTTCCTCAGCCAGCAGT
TTTCCTCCACAGCAGGCAGGCGGCTTTCCTAAGTCTGCATCTCCTGCTCCTGCTTCTAAG
CCACCAAGTCTTCCCCAGAATTCCCCTGTGGAAGTGAGTCGAGTTAGCACGCTTCCTGCA
GCCGCCCAGTCCACTGCTGGCTCATCACAAACACAGGTGACCACCCAGGTCAGGGTCAGC
CCCGTTGGTGTCAGGGTCATCAAAGTGGTGAATTCTGTTCCCGGAACCCACGCTTTGGTG
AGAGCTCCCAACCCCTCGCAGGGCTCTGCCACTCGGGCCACAGCTCCCGCGGGAATCTTG
CCCAGCAACCTGCCCTTAAGAGGCCAGCCACCAAAAGCGCCACCCACTGCCCTGCAAGCG
AATTCTCAAGTAGGTGTTCGAGTGATTTTAAAAGATGCTCCAGGTGCCAGGCCCTTAACT
CTGCTCCAGTTTCCACCAGGTTCGCTCATTGTGAACACCCAGCAGCTGCCTGGGCAGCTG
CAGCAGCAGCACCTCTATCAGCTGATTCCAGAGCTACAGGGTCAGCAGCCCTCCACTTCG
CATCCTCAGCAGCTAGTGTCACAGGGTGCAAGTGCACAAGGTTCAGCCAGTCAGAAAACG
GCCTTCTGTGCCCAGCAAGCTGTTGTCGTTAACGTCAGTAGAAGTTTTCTGCAGCCCCAG
GTGATTGTGTTGTCTCCGCCTGTCCCTGCCCTGCAAAGACCTGGGCAAAGCCTTCCTCTG
CAGAGAGTCCAGCTCTCCTCCGCC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.12

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MQQALELALDRAEYVIESARQRPPKRKYLSSGRKSVFQKLYDLYIEECEKEPEV-KKLRRNVNLLEKLVMQETLSCLVVNLYPGNEGYSLMLRGKNGSDS
MQ.ALE.ALDRA..VIESA.QRPPKRKY.S.G.KSV..KLYD.Y.EEC..EPEV...LR.NVNLLEKLV..E.LS.LVVNL.PG..GYSLMLRG.NGS.S
Retrocopy
MQHALERALDRAACVIESAQQRPPKRKYASRGEKSVYEKLYDIYVEECDREPEVAEELRSNVNLLEKLVQRESLSRLVVNLHPGGQGYSLMLRGENGSYS


Parental protein
ETIRLPYEEGELLEYLDAEELPPILVDLLEKSQVNIFHCGCVIAEIRDYRQSSNMKSPGYQSRHILLRPTMQTLICDVHSITSDNHKWTQEDKLLLESQL
ETIRL.YEEGELL.YLDAEELPP.LV.LLEKSQVN.FHCGCVIAEIRDYRQSS....PGYQSR.ILLRPTMQTL.CDV.S.TSD...WTQEDKLLLESQL
Retrocopy
ETIRLSYEEGELLQYLDAEELPPVLVGLLEKSQVNVFHCGCVIAEIRDYRQSSDVEAPGYQSRCILLRPTMQTLACDVESLTSDSQTWTQEDKLLLESQL


Parental protein
ILATAEPLCLDPSIAVTCTANRLLYNKQKMNTRPMKRCFKRYSRSSLNRQQDLSHCPPPPQLKLLDFLQKRKERKAGQHYDLKISKAGNCVDMWKQSPCN
ILATAEPLCLDPS..V.CTAN.LLYNKQKMNT.PMKRCFKR.S...L.RQQ.LSH.PPPP.L..L...Q..KE..AG..YDLKIS.AGN.VD.W.Q.PC.
Retrocopy
ILATAEPLCLDPSVSVACTANSLLYNKQKMNTDPMKRCFKRCSSPALSRQQELSHGPPPPELTVLTSCQPSKESNAGEQYDLKISGAGNYVDVWEQRPCD


Parental protein
LAIPSEVDVEKYAKVEKSIKSDDSQPTVWPAHDVKDDYVFECEAGNQYQKTKLTILQSLGDPLYYGRIQPCKEDEESDSQMSPSHSSTDDHSNWFIIGSK
LA.PSEVDVEKYA...KS..SDDSQPT.WPAH.V.DD.VFE.EAG.QY..TK.....SL.DPL..G.....K.......Q.SP.H.S..DHS..F..GSK
Retrocopy
LAVPSEVDVEKYATGKKSVSSDDSQPTGWPAHEVRDDSVFEWEAGDQYRDTKMFFMRSLNDPLISGKEMSPKK-ARYERQLSPPHPSRGDHSKSFMPGSK


Parental protein
TDAERVVNQYQELVQNEAKCPVKMSHSSSGSASLSQLSPGKDTEQPETVSVQSSVLGKGVKHRPPPIKLPSSSGNSSSGNYFTPQQTSSFLKSPTPPPAS
TDA..VV....ELVQ....CPVK.SHSSSGSASLS.LSPGK.TE.P.TV..Q.SVLG..V...PPP..LPSSSG.SSS...F.PQQ...F.KS..P.PAS
Retrocopy
TDAGTVVIRPEELVQKNSSCPVKVSHSSSGSASLSPLSPGKETERPKTVLLQASVLGEEVQPPPPPVTLPSSSGTSSSASSFPPQQAGGFPKSASPAPAS


Parental protein
KPPSLSRKSSVDLNQVSMLSPAALSPASSSQRTTATQVMANSAGLNFINVVGSVCGAQALMSGSNPMLGCNTGAITPAGINLSGLLPSGSLLPNALPGAM
KPPSL...S.V....VS.L..AA.S.A.SSQ....TQV.....G...I.VV.SV.G..AL....NP..G..T.A..PAGI.L...LP.....P.A.P.A.
Retrocopy
KPPSLPQNSPVEVSRVSTLPAAAQSTAGSSQTQVTTQVRVSPVGVRVIKVVNSVPGTHALVRAPNPSQGSATRATAPAGI-LPSNLPLRGQPPKAPPTAL


Parental protein
QATSQAGVPFGLKNTSSLRPLNLLQLPGGSLIFNTLQ---QQQQQ-LSQFTPQ-QPQQPTTSSPQQPGEQG-SEQGSTSQEQALSAQHAAVINLAGVGSF
QA.SQ.GV...LK.....RPL.LLQ.P.GSLI.NT.Q...Q.QQQ.L.Q..P..Q.QQP.TS.PQQ...QG.S.QGS.SQ..A..AQ.A.V.N.....SF
Retrocopy
QANSQVGVRVILKDAPGARPLTLLQFPPGSLIVNTQQLPGQLQQQHLYQLIPELQGQQPSTSHPQQLVSQGASAQGSASQKTAFCAQQAVVVNVS--RSF


Parental protein
MQSQAAVLSQLGSAENRPEQSLPQQRFQLSSA
.Q.Q..VLS....A..RP.QSLP.QR.QLSSA
Retrocopy
LQPQVIVLSPPVPALQRPGQSLPLQRVQLSSA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide