RetrogeneDB ID:
retro_ecab_1102
Organism:
Horse ( Equus_caballus )
Location:
X:18531631-18532002 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.95 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL31
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L31 [Source:HGNC Symbol;Acc:10334]

Genomic region (view in browser)





>retro_ecab_1102
ATGGCTGCTTCAAAGAAGGGTGGCAAGATGAAGGGTCGTTCTACCATCAACGAGGTGGTG
ACCAGAGAATACACCATCAACATTCACAAGCGCATCCATGAGTGGGTTTCAAGAAGCATG
CCCCTTGGACACTCAAAGAGATCCAGAAATTTGTCACAAAGGAGATGGCAACTCCAGATG
TGCAAATTGACATCAGGTTCAACAAAGCTGTCTGGGCCAAAGGAACAAGGAATGTCCCAT
ATCGTATCCATGTGCAGTTGTCCAGAAAATGTAATGAGGATGAAGATTCACCAAACAAAC
TCTATACATTGGTTACTCATGTTCCTGTCACCACTTTGAAAAATCTACAGTCAGTCAATG
TGGATGAGAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHG-VGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSP
MA..KKGG.K.KGRS.INEVVTREYTINIHKRIH..VGFKK.AP..LKEI.KF..KEM.TPDV.ID.R.NKAVWAKG.RNVPYRI.V.LSRK.NEDEDSP
Retrocopy
MAASKKGG-KMKGRSTINEVVTREYTINIHKRIHE/VGFKKHAPWTLKEIQKFVTKEMATPDVQIDIRFNKAVWAKGTRNVPYRIHVQLSRKCNEDEDSP


Parental protein
NKLYTLVTYVPVTTFKNLQTVNVDEN
NKLYTLVT.VPVTT.KNLQ.VNVDEN
Retrocopy
NKLYTLVTHVPVTTLKNLQSVNVDEN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide