RetrogeneDB ID:
retro_ecab_1104
Organism:
Horse ( Equus_caballus )
Location:
X:29280052-29280500 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
90.79 %
Coverage:
99.34 %
Frameshifts:
2
Stop codons:
0
Parental gene:
Parental gene symbol:
ARPC5
Parental gene aliases:
No gene alias available
Parental gene description:
actin related protein 2/3 complex, subunit 5, 16kDa [Source:HGNC Symbol;Acc:708]
Genomic region (view in browser)
>retro_ecab_1104
ATGTCGAAGAACACGGTGTCGTCAGCCCGGTTCCGGAAGGTGGATGTGGATGAGTATGAC
GAGAACAAGTTCGTGGACGAGGAAGACGGGGGCGACGGGCAGGCCGGGCCGACGAGGGCG
AGGTGGACTCCTGCCTGCGGCAAGGAAACACGATGGCTGCCCTACAGGCAGCTCTGAAAA
ACCCCCCATCAACACCAAGAGTCAGGCGGTGAAGGATCGAGCAGGCAGCATTGTCTTGAA
GGTACTCATCTCTTTTAAAGCTAATGATATTGAAAAGGCAGTTCAATCCCTGGACAAGAA
TGGTGTGGATCACCTCATGAAGTATATTTATAAAGGCTTTGAGAGCCCCTCTGACAATAG
CAGTGCTGTGTTATTGCAGTGGCATAAAAAGGCACTTGCTGCCGGAGGAGTAGGGTCCGT
TGTTCGAGTCTTGACTGCGAGGAAAACC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.81 |
| SRP021940_cerebellum | 1.49 |
| SRP021940_embryo | 2.06 |
| SRP021940_placental_villous | 4.78 |
| SRP021940_synovial_membrane | 3.59 |
| SRP021940_testis | 0.89 |
Parental protein coverage
Changes in the retrocopy sequence
