RetrogeneDB ID:
retro_ecab_1105
Organism:
Horse ( Equus_caballus )
Location:
X:38172227-38172979 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
92.91 %
Coverage:
85.67 %
Frameshifts:
3
Stop codons:
0
Parental gene:
Parental gene symbol:
RPS2
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]
Genomic region (view in browser)
>retro_ecab_1105
GGCCGGGGTCACGGCCGCAGAGCTCGCGGAGCAAGGCCGAGGACAAGGAGTGGATCCCCG
TCACCAAGCTGGGTCACCTGGTCAAAGACATGAAGATCAAGTCCCTGGAGGAATCTACCT
TTTCTCCCTGCCCATCAAGGAGTCTGAGATCATTGACTCTTTCCTGGGGGCATCTCTCAA
GGAGGAGGTTTTGAAGATTATGCCGGTGCAAAAGCACACCCGTGCTGGCCAGCGGACCAG
GTTCAAGGCATTTGTTGCCATCGGGGATTACAATGGACATGTCGGTCTGGGTGTGAAGTG
CTCCAAGGAGGTAGCCACTGCCATCCGTGGGGGCATCATCCTTGCCAAACTCTCCATTAT
TCCCGTGCGACGAGGCTACTGGGGGAACAAGATCGGCAAGCCCCCATACTGCTCCTTACA
AGGTGACAGGTCGCTGTGGCTCTGTGCTGGTGTGCCTCATCCCTGCCCCCAGGGGCAGTG
GCATTGTGTCAGCCCCTGTGCCCAAGAAGCTCTTGATGATGGCTGGTATTGACAACTGCT
ACACCTCAGCCAGGGGCTGTACTGCCACCCTTGGCAACTTTGCCAAGGCCACCTTTGATG
CCATCTCTAAGACCTACAGCTATCTCACCCCCGACCCCTGGAAAGAGACCGTGTTCACCA
AGTCTCCCTATCAGGAGTTCACTGACCATCTTGTAAAGAACCACACCAGAGTCTCCGTGC
AGAGGACCCAGGCTCCAGCTGTGGCTACCACA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.81 |
| SRP021940_cerebellum | 0.3 |
| SRP021940_embryo | 1.17 |
| SRP021940_placental_villous | 0.72 |
| SRP021940_synovial_membrane | 1.09 |
| SRP021940_testis | 0.65 |
Parental protein coverage
Changes in the retrocopy sequence
