RetrogeneDB ID:
retro_ecab_1106
Organism:
Horse ( Equus_caballus )
Location:
X:41758959-41759316 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.41 %
Coverage:
50.21 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
PSMA5
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, alpha type, 5 [Source:HGNC Symbol;Acc:9534]

Genomic region (view in browser)





>retro_ecab_1106
AATCTTCTCTCATTGTTTCCAAGATTATTTCATGAGTAATATGTCATTGGGATGATCAAG
CTTTGTTCCATAGCGATTGGGATACAGACTTCAGAGGTGTGTGTGCCTAGCTATAAAGAA
GAGAATTACCTCCTATTGCCCTGTAGCAGTGAGAAAGTTGTAGATATTGATGCTCAAACA
AGTTGTGTTGAAAGTAACCTAATGGCTGGAGCTAAGACTATAATTGATAAAGCCAGAGTG
GAGACATCGGACCTCTGCTTCACTTACAAAAAGATAAATGATATTGAAGAATAAAGCTAG
TTTGAGTCCAACTTGAATGTGCAATTTGGAGAAGAAAATACAGATCCAGAAGCCATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
NTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESV
N..S...RLF...Y.I..IKL.S.AIGIQTSE.VC....K.....L..P.S.EK.V.IDA...C..S.L.A.AKT.IDKARVET....FTY......E..
Retrocopy
NLLSLFPRLFHE*YVIGMIKLCSIAIGIQTSE-VCVPSYKE-ENYLLLPCSSEKVVDIDAQTSCVESNLMAGAKTIIDKARVETSDLCFTYKKINDIEE*


Parental protein
TQAVSNLALQFGEEDADPGAM
....SNL..QFGEE..DP.A.
Retrocopy
S*FESNLNVQFGEENTDPEAI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide