RetrogeneDB ID:
retro_ecab_1107
Organism:
Horse ( Equus_caballus )
Location:
X:44024742-44026023 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.53 %
Coverage:
61.88 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
ZXDC
Parental gene aliases:
No gene alias available
Parental gene description:
ZXD family zinc finger C [Source:HGNC Symbol;Acc:28160]

Genomic region (view in browser)





>retro_ecab_1107
TATAACCTCAAGGCACACATGAAGGGCCATGAGCAGGAGAACTCTTTCAAATGCGAAGTG
TGCGAGGAGAGCTTCCCCACGCAGGCCAAGCTCAGCGCCCACCAGCGGAGCCACTTTGAG
CCGGAGAGGCCCTACCAGTGCGCGTTTTCTGGCTGCAAGAAGACATTTATCACCGTGAGT
GCTCTGTTTTCCCATAACCGCGCCCACTTCAGGGAGCAGGAACTCTTTTCCTGCTCCTTT
CCTGGCTGCAGCAAACAGTACGACAAGGCTTGTCGGCTGAAAATTCACCTGCGGAGCCAC
ACTGGTGAGAGACCTTTCCTTTGTGACTTTGACGGCTGTGGCTGGAACTTCACTAGCATG
TCCAAACTGTTAAGGCACAAAAGGAAGCACGACGATGACCGGAGGTTCACGTGCCCTGTG
GAAGGCTGTGGGAAATCTTTCACAAGGGCTGAGCATCTGAAAGGCCACAGCATAACCCAC
CTGGGAACAAAGCCCTTTGTGTGCCCCGTGGAAGGCTGCTGTGCCAGGTTCTCTGCTCGA
AGTAGCCTCTACATTCACTCCAAGAAACACTTGCAAGATGTGGACACTTGGAAAAGCCGT
TGCCCAGTCTCCACTTGCAATAAACTCTTCACCTCCAAGCACAGCATGAAGACCCACATG
GCCAAAAGGCACAACCTCGGCCAGGATCTCTTAGCTCAGTTAGAAGCGGCAAATTCTCTT
ACGCCCAGCAGTGAACTTGCCAGCCAGGGACAGAGTGATCTCAGTGATGCAGAGCTAGTG
TCTCTCTTCTCTGACGTGCCTGGCAGTAGTTCTGCTGCAGTGCTAGACACGGCATTGGTA
AACTCTGGAATCTTGACTATTGATGTGGCTTCGGTGAGCTCAACTCTGGCAGGGAACCTT
CCTGCTGCTAATAATAGTTCCTTAGGGCAGGCTCTGGACCCTCGGGGCTTGATGGCCACC
GGTGACCTTCCTCAAAGTCTGGATACCTCTCTCTTTTTTGGAACGACAGCCGCCGGTTTT
CAGCAGAGCCCCTTAGGTATGGATGATGTCTCAAGTCTAAGCGCGGGGCCATTGGGATCT
CTGGGATCTTTGGCTATGAAAAACTCAAGTCAAGAGCCCCAAGCTTTGACCCCCAGCAGT
AAGCTAACAGTAGACTCAGATGCTCTGACTCCTTCAAGCACCCTTTGTGAAAACAGTGTC
TCAGATCTACTGACACCAACCAAAGCAGAATGGAACATACATCCTGACTCTGACTTCTTT
GGACAGGAGGAAGAAACCCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
YNLKAHMKGHEQESLFKCEVCAERFPTHAKLSSHQRSHFEPERPYKCDFPGCEKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSH
YNLKAHMKGHEQE..FKCEVC.E.FPT.AKLS.HQRSHFEPERPY.C.F.GC.KTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSH
Retrocopy
YNLKAHMKGHEQENSFKCEVCEESFPTQAKLSAHQRSHFEPERPYQCAFSGCKKTFITVSALFSHNRAHFREQELFSCSFPGCSKQYDKACRLKIHLRSH


Parental protein
TGERPFICDSDSCGWTFTSMSKLLRHKRKHDDDRRFTCSVEGCGKSFTRAEHLKGHSITHLGTKPFECPVEGCCARFSARSSLYIHSKKHLQDVGAPKSR
TGERPF.CD.D.CGW.FTSMSKLLRHKRKHDDDRRFTC.VEGCGKSFTRAEHLKGHSITHLGTKPF.CPVEGCCARFSARSSLYIHSKKHLQDV...KSR
Retrocopy
TGERPFLCDFDGCGWNFTSMSKLLRHKRKHDDDRRFTCPVEGCGKSFTRAEHLKGHSITHLGTKPFVCPVEGCCARFSARSSLYIHSKKHLQDVDTWKSR


Parental protein
CPVSSCNRLFTSKHSMKAHVVRQHSRRPDLFPQLGAPSSLTPSSELGGPGQSELNNIDLAALFSDTPGDGGSAVGASDEALNSGILTIDVTSVSSSLGGN
CPVS.CN.LFTSKHSMK.H....H....DL..QL.A..SLTPSSEL...GQS.L....L..LFSD.PG....AV.......NSGILTIDV.SVSS.L.GN
Retrocopy
CPVSTCNKLFTSKHSMKTHMAKRHNLGQDLLAQLEAANSLTPSSELASQGQSDLSDAELVSLFSDVPGSSSAAV-LDTALVNSGILTIDVASVSSTLAGN


Parental protein
LP-ANNSSLG-PMDPLVLVAHSDIPPGLDSPLVLGTAATVLEQSSFSVDDVQTVSAGALGCLVALPVKDVGQDPEAVTSSSNLAANTTTLTSSSVPQGST
LP.ANNSSLG...DP..L.A..D.P..LD..L..GT.A....QS....DDV...SAG.LG.L..L..K...Q.P.A.T.SS.L......LT.SS......
Retrocopy
LPAANNSSLGQALDPRGLMATGDLPQSLDTSLFFGTTAAGFQQSPLGMDDVSSLSAGPLGSLGSLAMKNSSQEPQALTPSSKLTVDSDALTPSST-LCEN


Parental protein
GVPELQAPIKVEPASPPGPGAFRQRERSR
.V..L..P.K.E....P....F.Q.E...
Retrocopy
SVSDLLTPTKAEWNIHPDSDFFGQEEETQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide