RetrogeneDB ID:
retro_ecab_1108
Organism:
Horse ( Equus_caballus )
Location:
X:44387069-44387902 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.72 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1108
ATGATGAGATAAAGGAATATATTCCAAGTAAGGAAACAGGATAAAAGCCCAGAAAAAGAA
CTAAATGAAACAGAAATAGACTATCTACCTGACAAAGAGTTCAAACAAAGAGTCATAAGG
ATGCTCATTGATCTTGGGAGAAGAACTCAGTGAAAACATCAACAAAGAATTGGAAAAGAT
AAAAAAGAATCAATCAGAAATGAAGAATACAATACCAGAAATGAAACTTTCACTAGAGGG
ACTCAATAGCAGAGTAGATACAGAAGAATGGATCAGCAAGCTGGATGAAAGACTAGAGGA
AATCACACAAGCTGAACAGGTAAAAGAAAAAAAAAATTAAAAAGAGTGAGGGCAGTCTAA
GGGACCTCTGGGACAACATCTAGCATACTAATATCTGTGTTATAGGTGTCCCAGGAGGAG
AAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGAAATCATAGCTGACAACTTTCCTA
ACCTAAGGAAGGAAACAGACATCCAAGTACAGGAAGCACAGACAGCACCAAATAAGAGAA
CCCCAAGGAGGCCCACACCAAGACACATTATAATTGAAAGGTCAAGAATTAAAGATGAGA
GAGAATCCCAAAAACCACAAGAGAAGGGCAACAAGTTACATTCAGAGGAAATCCCATAAT
GCTATCTGCTGACTTCTCAGCAGAAACTTTACAGGCTAGAAGGGAGTGGCACAATGTATT
TAAAGTGCTGAAAGGGAAAAAACCTACAGCCAAGAATACTCTACCCAGCAAGCTTATCAC
TCAGAATGATAGGAGAGATAAAGAGTTTCTCAGACAAGCAAAAACTAAAGGAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MRRQRNMFHARVQDKTPEKELNETQRDNLPDKEFKQKGIRMLID-LGRRMDKHSENVNKELENIKKSQSEMKSTILKMKNSLEGLNSRVDDTEEWIKKLD
M.R.RN.F..R.QDK.PEKELNET..D.LPDKEFKQ..IRMLID.LG......SEN.NKELE.IKK.QSEMK.TI..MK.SLEGLNSRVD.TEEWI.KLD
Retrocopy
MMR*RNIFQVRKQDKSPEKELNETEIDYLPDKEFKQRVIRMLID\LGEEL---SENINKELEKIKKNQSEMKNTIPEMKLSLEGLNSRVD-TEEWISKLD


Parental protein
EKLEEISQ-VNQVKEKTILKNDSKIKELWDNIKHANIRIISVPGGEERHKGEENLFEEIIDENFPNLRKETDIQVQEEQRAPNKSSPKRPTPIHIIIKMS
E.LEEI.Q..N................LWDNI.H.NI..I.VPGGEER.KG.ENLFEEII..NFPNLRKETDIQVQE.Q.APNK..P.RPTP.HIII..S
Retrocopy
ERLEEITQ\LNRXXXXXXXXSEGSLRDLWDNI*HTNICVIGVPGGEERDKGAENLFEEIIADNFPNLRKETDIQVQEAQTAPNKRTPRRPTPRHIIIERS


Parental protein
KIKDK-ERILKAARERPEVTYKGKPIRLSADFSAETLQATREWHDIFKVL-KGKNLQPRIFYPSRSSFRMEGEIKRFPDKQNVKE
.IKD..ERI.K..RE...VT..G.PI.LSADFSAETLQA.REWH..FKVL.KGKNLQPRI.YP...S.RM.GEIK.F.DKQ..KE
Retrocopy
RIKDE/ERIPKTTREGQQVTFRGNPIMLSADFSAETLQARREWHNVFKVL\KGKNLQPRILYPASLSLRMIGEIKSFSDKQKLKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide