RetrogeneDB ID:
retro_ecab_1109
Organism:
Horse ( Equus_caballus )
Location:
X:45521074-45521841 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
50.58 %
Coverage:
52.67 %
Frameshifts:
1
Stop codons:
3


Parental gene:
Parental gene symbol:
GMCL1
Parental gene aliases:
No gene alias available
Parental gene description:
germ cell-less, spermatogenesis associated 1 [Source:HGNC Symbol;Acc:23843]

Genomic region (view in browser)





>retro_ecab_1109
GACCTCTGCCCTAACGTCACCTAGGACCTCGTGAAAGAGCTCAATGCCTCATCAGAGCTC
TTGGTGATGGAGGTGGAGATGGAGGTGTACACCACGCTGAAACAGTGGATGTTCTTGCAG
CTGCAGCCGACATGGAGGGGCCCCACAGAGCCCTATTGCCCGAGGCCGACTTGTGGTTTG
CCAGGTCCAGGAGGGAATAGGAGGGAGCTCCTTTCCTGGAGACCGAGGAGGGCAGAGCCT
TCGTGCCAGTGTTCCAGCAGCTGCGGCTCGCCTACATAATCTGTGACCTACCTTCAGCGC
ATATCATCGACCAGGATGCTCTGATCCCTGCCTCATGGGTGACCCCAGTGTACAAAGAGC
AGTGGCTTACCTTCCTCCGGGCTGAGCAGACCAGGGAGCTCGGGCCGGTGGACGTCTACG
TGTCCGACCCGCGGCAGAACAGCATGTGATGCGGTGGCCAGCTCCACAGGGATGAGCAGT
GCAGCTGGCGATGGAATGGCTTCAACTTCGGCTGGGACCTGGTGGTGTGCTACACCAACC
GGCGCATCGTTTTCCGGCGCAGCGTGCTGAACAAGTCCTGCGGCCTCGGGGTCAGCTTAC
TCTGGCAGAGAAAGGTCACATTCCGCCTGCGCCTGGCCTCCTTGGACAGGGCTGGAAGAG
CCGTTTTCAGGAAGGACACAGAATACCAGATGCTTTCCCTGAGAAAGGATCGAGAGCTAG
AGGTAGTGAACCTGGAGAATCAAGATGTGGTCTTCCCCATATATGTA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ELFKELSINVMKQLIGSSNLFVMQVEMDVYTALKKWMFLQLVPSWNGSL-KQLLTETDVWFSKRRKDFEGMTFLETEQGKPFVSVFRHLRLQYIISDLAS
.L.........K.L..SS.L.VM.VEM.VYT.LK.WMFLQL.P.W.G.....LL.E.D.WF...R...EG..FLETE.G..FV.VF..LRL.YII.DL.S
Retrocopy
DLCPNVT*DLVKELNASSELLVMEVEMEVYTTLKQWMFLQLQPTWRGPT/RALLPEADLWFARSRRE*EGAPFLETEEGRAFVPVFQQLRLAYIICDLPS


Parental protein
ARIIEQDSLVPSEWLSSVYKQQWLAMLRAEQDSEVGPQEINKEELEGNSMRCGRKLAKDGEYCWRWTGFNFGFDLLVTYTNRYIIFKRNTLNQPCSGSVS
A.II.QD.L.P..W...VYK.QWL..LRAEQ..E.GP..........NSM.CG..L..D....WRW.GFNFG.DL.V.YTNR.I.F.R..LN..C...VS
Retrocopy
AHIIDQDALIPASWVTPVYKEQWLTFLRAEQTRELGPVDVYVSDPRQNSM*CGGQLHRDEQCSWRWNGFNFGWDLVVCYTNRRIVFRRSVLNKSCGLGVS


Parental protein
LQPRRSIAFRLRLASFDSSGKLICSRTTGYQILTLEKDQEQVVMNLDSRLLIFPLYI
L...R...FRLRLAS.D..G.......T.YQ.L.L.KD.E..V.NL......FP.Y.
Retrocopy
LLWQRKVTFRLRLASLDRAGRAVFRKDTEYQMLSLRKDRELEVVNLENQDVVFPIYV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide