RetrogeneDB ID:
retro_ecab_111
Organism:
Horse ( Equus_caballus )
Location:
X:103208900-103209236 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.53 %
Coverage:
99.13 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_111
ATGGGAGATGAAAGAGGTGACAACTTTGAAGGTATGAGCACCGAACGCCTTAAACTGGAG
TTAATGGAAGAAATCCATATGAGAAACTTAGTACAACTCTCAATACTTGAAATAGGAAAC
ATGATTGTGGAACTCAATACTAGAAATAAACCCAGTAAGTGGGAAATCCGTTATAAAACA
CAACTTGAACTGAATCATCAACTAGAAAAGCAAATTGCTACTCTCAAAGAGAAAATGGAA
ATGGTCCGTGGAAATCCTTCAGATAGACTATCTTCTATTCATCTCTATGAGCAAATGCCA
GTGGAATCCTTAAATATACTACTTAAACAGCTAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.47

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MEEGKGDTFEGVSTDRLKPELLEEIHRKDIVQLSILEIREKIAELEAKLNTDDEGGEWKTRYETQLELNDQLEKQIVSLKEKMEKIRGNPADRLSSIRVY
M....GD.FEG.ST.RLK.EL.EEIH....VQLSILEI...I.E....LNT......W..RY.TQLELN.QLEKQI..LKEKME..RGNP.DRLSSI..Y
Retrocopy
MGDERGDNFEGMSTERLKLELMEEIHMRNLVQLSILEIGNMIVE----LNTRNKPSKWEIRYKTQLELNHQLEKQIATLKEKMEMVRGNPSDRLSSIHLY


Parental protein
ERMPVVSKRWLNKK
E.MPV.S...L.K.
Retrocopy
EQMPVESLNILLKQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide