RetrogeneDB ID:
retro_ecab_1110
Organism:
Horse ( Equus_caballus )
Location:
X:45650299-45650781 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
63.58 %
Coverage:
54.03 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1110
GATCATACCCTGGAAATTCTTGTGAATGAGCTTGACCCAGTAGTTACAGACCACTTGTGC
ATGAAAGATGGTGTTACTACAAAGGATGTCACTCATAAGAGTGGAATTTGTGACCTGACA
CTAAGTTTTGTCAATGTTACCACATTATACAATCTTTCTGGTTATCTGATGAATGGAATC
AAGTCAGAGGGAACTTATTGGAATATCCGCATCACTCCAGAACCAGAATTATTTTATGGT
AACGTTGAAACAAACATCTGTCAGAACTCCTATAATATCCTGATTAGGACAGTTGTGGGA
GTCTTCAAGCCAGGAAAACTCATGATCACCCTGTTTGTAGATCAGAGTTTAAATGTCACA
CATTGTTTTCTTCACCCATGAATATTGAAGATTTTAAACATCTTAGTCACCAGAGTGCTA
TGTTCTGTGATTACAACTTTGTTTTGACCAGTTTTTTTAAGAAGCAGCAACAACAGCTGA
GT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVE
D.TLEIL..ELDP.V.D...MKDGVT.KDVT..SGI.DL....V...T..N..GY.MNG.KS.GTYW.I.ITPEPE..Y...ETN..Q.SY..LIR.VV.
Retrocopy
DHTLEILVNELDPVVTDHLCMKDGVTTKDVTHKSGICDLTLSFVNVTTLYNLSGYLMNGIKSEGTYWNIRITPEPELFYGNVETNICQNSYNILIRTVVG


Parental protein
VFKPGKFVTTLFVNQS-SKCRTVLSSPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQQQQS
VFKPGK...TLFV.QS..KC.T..SSP..IE.FK.L..QSAMF.DYNFV.TSF.KKQQQQ.S
Retrocopy
VFKPGKLMITLFVDQS/FKCHTLFSSPMNIEDFKHLSHQSAMFCDYNFVLTSFFKKQQQQLS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide