RetrogeneDB ID:
retro_ecab_1111
Organism:
Horse ( Equus_caballus )
Location:
X:48662607-48662925 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.07 %
Coverage:
62.35 %
Frameshifts:
0
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1111
AATATATGAAAAGTCCAAACAGATGTTACAAAACTGAAGAATGCAATAACTGAACCAAGA
AATACACTAGAGGGATTCAATAACAAACTACATGAAGCTGAAGAAAGAATCAGTAAACTT
GAAGACAGGACGAAGGAACTTGCCCAATGAGAGCAACAAAAAGAAAAAAGAATTTAAAAA
AGTGAAGATAGCTTAATGGACTTATAGGACAACATCAAGTGGATTAACATTCCCTATATA
GGAGTCCCACAAGGAGAAGAGATAGAGAAAGGGGTAGAGTTATTTGAAAAAATAATGGCA
GAAAACTTCCTTAACCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRA-ELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPEGEERDKGAENLFVEII
.I.K.Q..VT.LKN.I.E..NTLEGFN..L.EAEERIS.L.DR..EL.Q.EQ...........SL..L.DNIK..NI..IGVP.GEE..KG.E.LF..I.
Retrocopy
NI*KVQTDVTKLKNAITEPRNTLEGFNNKLHEAEERISKLEDRTKELAQ*EQXXXXXXXXXEDSLMDL*DNIKWINIPYIGVPQGEEIEKGVE-LFEKIM


Parental protein
QENFPNL
.ENF.NL
Retrocopy
AENFLNL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide