RetrogeneDB ID:
retro_ecab_1113
Organism:
Horse ( Equus_caballus )
Location:
X:58513978-58514755 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
58.36 %
Coverage:
50.67 %
Frameshifts:
4
Stop codons:
10
Parental gene:
Parental gene symbol:
PPAT
Parental gene aliases:
No gene alias available
Parental gene description:
amidophosphoribosyltransferase [Source:RefSeq peptide;Acc:NP_001098786]
Genomic region (view in browser)
>retro_ecab_1113
TTATGCACTAGTCATCTCATTCCTGTGACTGACGTAAATGGAAAAAGGAAATAAAAATCC
TACAGAAACAGAAGGGTGTGTGGTGATTTCAGAATCTTGTAACTTTTTATCTATTGGTAT
GTATTGCCATGAAGTCTTTCCTAGAGAAATTATGAAAATATCTAGACATTATGTCTAAAC
TTTCAATATTATATTAAGGTCTGAAGGAAATTTGACGTCTCTTTGTATGTTTGAATAGGC
TTATTTTGCAAAACCAGATGGTATATTTGAAGAGCAAATAGTAAGATATCATTGTTGTCA
GCAACTGGCAATTTAAGCACCTGTAAAGAGGAGTTGGTGAGCACATTTCCCAAATTTGCT
GTGCCTGCTGCTCCTGGTTAGTCAGAAAAATGTACATTTCCCTATGTGAAGGTGCTGTAT
AAAAGCTGGTAGTTAGGAATAACTCTCATCCAGCTAATATGAGATTAAGAGAACTTGGTG
TTGAAAAATGAAATTGAAATATTATCAGACAACTTAATAGGTGAAAGAATTGTTCCTATA
GATGATTAACTTGCAAGAGACAATATCATACCGCCCATAACAAAATTTCTCAAAGAATCT
CATGCAAAAGAAATGCAAACTTGAGTAGCTTCATCACCAATATGATTTCCGTGCTTCATG
AGAATAGACATTTCCACAAAAGAGGAGCTTATTGCCAATAAATTTGATCATTTCGCATAA
TATCTGGGAGCAAAGAGCATCACGTATCTGTCACTAGAAGTACTGTTTTCATCTATC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
