RetrogeneDB ID:
retro_ecab_1114
Organism:
Horse ( Equus_caballus )
Location:
X:58975248-58975717 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.59 %
Coverage:
63.52 %
Frameshifts:
1
Stop codons:
8


Parental gene:
Parental gene symbol:
CTHRC1
Parental gene aliases:
No gene alias available
Parental gene description:
collagen triple helix repeat containing 1 [Source:HGNC Symbol;Acc:18831]

Genomic region (view in browser)





>retro_ecab_1114
CGTGATAGATTCAAAGGAAGAAAATGTGAAATGTTCAAGGGAAATTTTAGAGAAATCTAG
CCACCTAACTATGAGCAGTATTCATAGGGTTCACATAACTATGACATAGGTCTCAGAAAA
CTTTCAGAGTGTACATTTACGTCGATGCATTCTAACACTGCTCTAGGAGTATTGTTTAGT
GGACCATTTTGACAAAAATGTAAAAATGCAAGCTGTCAGTAGTGGTATTTTTACATCGAG
TGGAGCTGAATGTACTGGACTCCTTCCCATGGGAGCCATAATAAATTTGGACCAAGGAAT
CCTTGAACTGAATTCAACATCAGTCTCCATCACACTTCTGCAGTAGAAGGAAGGCTCATC
CAAGGAAAACAGAGTCAGGTAAATAGATGTTTTTATCTAAGTTGGAACTTGTTCAGATTC
ATCAAAATAAAATTCTTATACATATTGGAATTTAGTGTTTGATGTCATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RDGFKGEKGECLRETFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYF-TFNGAECSGPLPIEAIIYLDQG
RD.FKG.K.E.....F.E...PNY.Q.S..S.NY.I.L.K..ECTFT.M.SN.AL.VLFSG....KC.NA.CQ.WYF.T..GAEC.G.LP..AII.LDQG
Retrocopy
RDRFKGRKCEMFKGNFREI*PPNYEQYS*GSHNYDIGLRKLSECTFTSMHSNTALGVLFSGPF*QKCKNASCQ*WYF\TSSGAECTGLLPMGAIINLDQG


Parental protein
SPELNST-INIHRTSSVEGLCEGIGAGLVDIAIWVGTCSDYPKGDASTGWNSVSRII
..ELNST...I......EG..........D..I.VGTCSD..K....T.WN.V...I
Retrocopy
ILELNSTSVSITLLQ*KEGSSKENRVR*IDVFI*VGTCSDSSK*NSYTYWNLVFDVI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide