RetrogeneDB ID:
retro_ecab_1115
Organism:
Horse ( Equus_caballus )
Location:
X:60753332-60753736 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.06 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1115
ATGGCTGCCCTCAGACCCCTCGTGAAGCCCAAGATCGTCAAAAAGAGGACCAAGAAGTTC
ATTCGGCACCAGTCAGACTGATATGTCAAAATTAAGCGTAACTGGCGGAAACCCAGAGGC
ATTGACAATAGGGTGCGCAGAAGATTCAAGGGCCAGATCTTGATGCCCAACATTGGTTAT
GGGAGCAATAAGAAAACGAAGCACATGCTGCCCAGTGGCTTCCGGAAGTTCCTGGTCCAC
AACGTCAAGGAGCTTGAAGTGCTGCTCATGTGCAACAAATCGTACTGTGCTGAGATTGCT
CACGACGTCTCCTCCAAGAACCGCAAAGCCATCGTGGAAAGAGCAGCCCAGCTGGCCATC
AGAATCACCAATCCCAATGCCAGCTGCGCAGCGAAGAAAACGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.12
SRP021940_cerebellum 0.05
SRP021940_embryo 0.31
SRP021940_placental_villous 0.27
SRP021940_synovial_membrane 0.21
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIA
MAALRPLVKPKIVKKRTKKFIRHQSD.YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIA
Retrocopy
MAALRPLVKPKIVKKRTKKFIRHQSD*YVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIA


Parental protein
HNVSSKNRKAIVERAAQLAIRITNPNA-RLRSEENE
H.VSSKNRKAIVERAAQLAIRITNPNA..LRSEENE
Retrocopy
HDVSSKNRKAIVERAAQLAIRITNPNA/QLRSEENE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide