RetrogeneDB ID:
retro_ecab_1116
Organism:
Horse ( Equus_caballus )
Location:
X:61808743-61809077 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
80.36 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
UQCRB
Parental gene aliases:
No gene alias available
Parental gene description:
ubiquinol-cytochrome c reductase binding protein [Source:HGNC Symbol;Acc:12582]

Genomic region (view in browser)





>retro_ecab_1116
ATGGTGAGCAGGCCTGTCATTGCAGCATCAAGCCAGTGGCTGGAGGGTATTCAAAAATGG
AATTACTATGCTGCTGGGTTTAATAAACTGGGGTTAATGTGAGATGATACAATATATGAG
GATGATGATGTAAGAGAAGACATAAAGAAGGCTTCCTGAGAAATTTTATAATGACAGGGT
GTTTCACACTAAAAGAGCACTGGATCTGACCATGAGGCAGCAGATCATGCCTAAAGACCA
GTGGACAAAATATGAGGAGGATATATTCTACCTTGAACCATATCTGAAAGAGTTTATTTG
GGAAAGAAAAGAGAGAGAAGAATGGGCAAAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MASRPTVAASSRWLEGIRKWYYNAAGFNKLGLMRDDTIHENDDVKEAI-RRLPENLYNDRVFRIKRALDLTMRQQILPKEQWTKYEEDKFYLEPYLKEVI
M.SRP..AASS.WLEGI.KW.Y.AAGFNKLGLM.DDTI.E.DDV.E.I.RRLPE..YNDRVF..KRALDLTMRQQI.PK.QWTKYEED.FYLEPYLKE.I
Retrocopy
MVSRPVIAASSQWLEGIQKWNYYAAGFNKLGLM*DDTIYEDDDVREDI\RRLPEKFYNDRVFHTKRALDLTMRQQIMPKDQWTKYEEDIFYLEPYLKEFI


Parental protein
RERKEREEWAKK
.ERKEREEWAKK
Retrocopy
WERKEREEWAKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide