RetrogeneDB ID:
retro_ecab_1117
Organism:
Horse ( Equus_caballus )
Location:
X:64311389-64311829 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.87 %
Coverage:
83.05 %
Frameshifts:
3
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1117
AGGAGAGAGAAGATTAATAAAAATGGAGAAATTCTATGAGAAATATCTGACTCAATTAGG
AAAAGTGAGACAAGGATAATGGGTATCCCAGAAGAACAGAGGGAGAAGGAAGTAGACAGC
TTATTTAGGGAAATTATAGCTGAGAACTTCCCAAACCTGTGAAGGACCTGGATACACAAG
TACATGAAGTAATAGAACTAATTATCTCACTGAAAAATGACCTTCTCCAAGGCACATTAT
ATTAAAACTGTCAAAAGTCAATGAAAAAGAAAGAATATTAAGGGCAGCCAAAGAGAAAAT
AAAAAACAATAATCTACAAAGAACTCCCCATTAGGCTATCAGTAGATTTCTCAGCAGAAA
CTCTATAAGCCAGGAGAGAGTGAAATGACACATTCAAAATATTGAAAGACAAAAATTATC
AGCCAAGAATAATCTATCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KEKRMKKIKDSLLEKYLTIRKSNIRIIGIPEGEEKQKDTESLFKEIIAENFPNL-GKKLDLQVHE-ANRTPNYIKAKRPSPRHIVLKLVKVNDKEKILRA
......K....L.E....IRKS..RI.GIPE.E...K...SLF.EIIAENFPNL..K.LD.QVHE..NRT.NY...K.PSPRHI.LKL.KVN.KE.ILRA
Retrocopy
RREKINKNGEIL*EISDSIRKSETRIMGIPE-EQREKEVDSLFREIIAENFPNL/VKDLDTQVHE/SNRT-NYLTEK*PSPRHIILKLSKVNEKERILRA


Parental protein
--ERQKKINYKRT-PIRLSADFSAETLHTKKEWNDTFETLRDKNFQPRILYP
..E..K..N..RT.PIRLS.DFSAETL....E.NDTF..L.DKN.QPRI.YP
Retrocopy
AKEKIKNNNLQRT\PIRLSVDFSAETL*ARRE*NDTFKILKDKNYQPRIIYP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide