RetrogeneDB ID:
retro_ecab_1118
Organism:
Horse ( Equus_caballus )
Location:
X:68937646-68938227 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.83 %
Coverage:
58.33 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
NT5C3A
Parental gene aliases:
NT5C3A, NT5C3
Parental gene description:
5'-nucleotidase, cytosolic IIIA [Source:HGNC Symbol;Acc:17820]

Genomic region (view in browser)





>retro_ecab_1118
CAAAGTTTAGTTCTCACCAAGAACCCTACAAGACTAGAAGAAAATCTCTGTGGTCTTATC
AAAGGAGGAGCTGCCAAATTTCAGATACTAACAGACTTTTATATGATACTATGTAGATTT
TCCTTAGGAAAAAGATGCTCAACATGACACAATATCATTGACAACTGTAAGCTGGTTACA
AATGAATGTCAAAAAATGTTACTGAAGCTAAATAAAAAAACATTATGCTATTAAAATTGA
TCTTAATCTAACTTTAGAAGGGAAGTACCCTTGTATGATAGAAGGGTATACTAAATCACA
TGATTTTCTTTTTGAAAAGACTTTACCAAAATCTAAGCTTAAAGAAATGACAGCAGAATC
TGACATTATGCTCAAAGAAAGATGTGAAATTTTCTTTGATAAGTTCTAAGAAAACAGTAT
CCCTATATTTATATTTTCAGCTGGTATTGGTGATATGTTATAGATGGTATCCATCAAGGT
GGTATTTATCATCCAGATGTCAAAGTAGCCTCAACTTCATGGATTTTTATGAAAATGGGA
TTCTCAAAGGATTTAAAGAACTATTTCATATAATTAACAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFDMTLSRFSYEGKRCPTCHNIIDNCKLVTDECRKKLLQLKEK-YYAIEVDPVLTVEEKYPYMVEWYTK
.S.V..KNPTR.EE..CGLIKGGAAK.QI.TDF.M.L.RFS..GKRC.T.HNIIDNCKLVT.EC.K.LL.L..K..YAI..D..LT.E.KYP.M.E.YTK
Retrocopy
QSLVLTKNPTRLEENLCGLIKGGAAKFQILTDFYMILCRFSL-GKRCST*HNIIDNCKLVTNECQKMLLKLNKK\HYAIKIDLNLTLEGKYPCMIEGYTK


Parental protein
SHGLLVEQALPKAKLKEIVAESDVMLKEGYENFFDKLQQHSIPVFIFSAGIGDVLEEV-IRQAGVYHPNVKVVS-NFMDFDDKGLLKGFKGELIHVFNK
SH..L.E..LPK.KLKE..AESD.MLKE..E.FFDK....SIP.FIFSAGIGD.L..V.I.Q.G.YHP.VKV.S.NFMDF...G.LKGFK.EL.H..NK
Retrocopy
SHDFLFEKTLPKSKLKEMTAESDIMLKERCEIFFDKF*ENSIPIFIFSAGIGDML*MV/IHQGGIYHPDVKVAS/NFMDFYENGILKGFK-ELFHIINK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide