RetrogeneDB ID:
retro_ecab_1119
Organism:
Horse ( Equus_caballus )
Location:
X:69634484-69634970 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.78 %
Coverage:
98.18 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1119
AAGTTCAACCCCAAGGAGATCAAAGTCATGTACCTGAAGTGCACCAGTGGGAAAATCCGG
TACTATGTCTGCTCTGACCCCCAAGATAGGCCCCCTGGGTCTGTCTCCAGAAAAGGTTTG
TGATGACATGGCCAAGGCAACTAGTGACTGGAAGGGTCTGAAGATTACAGTGAAACTGAA
CCTTCAGAACAGACAGGCTTAGATTGAGGTAGGCCCTTTTGCCTCTGCCCTGATCGTCAA
AGCACTCAAGGAACCACCAAGCGACAGAAAGAAGTGGAAAGACGTTAAGCACAGTGGAAT
ATCACATTTTATGAGACTGTCAACATTGCGTGACAGGTGCAGCACTAATTGTAAGCAAGA
GAACTCTCTGGAACCATTAAAGAGATCCTGGGGACTTCCCAGTCTGTGGCTTGCAATGTT
GATGGCCACCACCCTCAGGACATCATAGATGACTTCAACAATGCTGCAGTGGAATTCCCA
GCTAGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KFDPNEIKVVYLRCTGGEV-GATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSG
KF.P.EIKV.YL.CT.G...G..SAL.PKIGPLGLSP.KV.DD.AKAT.DWKGL.ITVKL..QNRQA.IEV.P.ASALI.KALKEPP.DRKK.K..KHSG
Retrocopy
KFNPKEIKVMYLKCTSGKI\GTMSALTPKIGPLGLSPEKVCDDMAKATSDWKGLKITVKLNLQNRQA*IEVGPFASALIVKALKEPPSDRKKWKDVKHSG


Parental protein
-NITFDEIVNIARQMRHRSLARELSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPAS
.NITF.E.VNIA.Q..H...ARELSGTIKEILGT.QSV.CNVDG.HP.D.IDD.NN.AVE.PAS
Retrocopy
/NITFYETVNIA*QVQH*L*ARELSGTIKEILGTSQSVACNVDGHHPQDIIDDFNNAAVEFPAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide