RetrogeneDB ID:
retro_ecab_1121
Organism:
Horse ( Equus_caballus )
Location:
X:74959267-74960528 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.8 %
Coverage:
99.53 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
BZW2
Parental gene aliases:
No gene alias available
Parental gene description:
basic leucine zipper and W2 domains 2 [Source:HGNC Symbol;Acc:18808]

Genomic region (view in browser)





>retro_ecab_1121
AGAAATTTTATGACTAAGCATCAGGAGCCAGTGCTAACAGGCCAGCGGTTCAAAACTCAG
AAAAGGGATGAAAAAGAGAAATTCAAACCCACTGTCTTTAGGGATACACTTGTCCAGAGG
CTTAATGAAGATAGGGATGACCTTGAAGCTGTAGCCAAGTTTCTGGACTCTACAGGCTCA
AGATTAGATTATTGTCGCTGTGCAGACACACTCTTCGATATCCTGGTGGCTGGCAGTATG
CTTGCCCCTGGAGGAACACGCATAGATGATGGTGACAAGACGAAGATGACCAACCACTGT
GTGTTTTCAGCAAATGAAGATCATGAAATCATCTGAAACTATGCTCAGGTCTTCAATAAA
CTCATCAGGAGATATAAGTATTTGGAAAAGGCATTTGAGGATGAAATGAAAAAGCTTCTC
TTCTTCCTTAAAGCCTTTTCCAAAACAGAGCAGACAAAGTTGGCAATGCTGTCAGGGATC
CTGCTAGATAATGGCACCCTTCCTGCCACCATCCTTACCAGTCTCTTCACCGACAGCTTA
GTCAAGGAAGGCATTGCAGCCTCATTTGCTGTCAAGCTTTTTAAAGCATGGATGACAGAG
AAAGATGCCAACTCTCTGCTCTCTTCTTTGAGAAAAGCCAACTTAGACAAGAGGCTACTT
GAGCTCTTTCCAGTTAACAGACAGAGTGTGGATCATTTTGCTAAATACTTGCTGATGCAG
GTCTGAAGGAGCTTTCTTACTTCCTGTGAGTCCAGCGGTCCCTAGGCACCAGGAAGGAAC
TGCAGAAGGAGCTCCAGGAGTGTCTTTCTCAGGAATGCCCGATTGAGGAGGTGGTGCTCT
ATGTGAAAGAAGAAATGAAGAGGAATGATCTTCCAAAAACAGCAGTGATTGGACTCCTAT
GGACCTGTATAATGAATGCTGTTGAGTGGAACAAGAAGGAAGACCTCATTGCAGAGCAGG
CCCTTAAACACCTGAGGCAATACGCTCCTCTCCTGGCTGTGTTCAGCTCCCAAGGCCAGT
CAGAGCTGATCCTCCTCCAGAAGGTTCAGGAATACTGTTATGACAACATCCATTTCATGA
AAGCCTTTCAGATCTGGTTCTCTTTTATAAAGCTGGTGTGCTGAGTGAAGAAGCGATATT
GAAATGATACAAAGAAGCACATGTTGCCAAAGGCAAGAGTGTTTTTCTTGACCAGATGAA
GAAATTTGTCAAGTGGTTACAAAACGCAGAAGAAGAATCTGAATCGGAAGGCGAGGAAAG
T

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RNFMNKHQKPVLTGQRFKTRKRDEKEKFEPTVFRDTLVQGLNEAGDDLEAVAKFLDSTGSRLDYRRYADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHC
RNFM.KHQ.PVLTGQRFKT.KRDEKEKF.PTVFRDTLVQ.LNE..DDLEAVAKFLDSTGSRLDY.R.ADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHC
Retrocopy
RNFMTKHQEPVLTGQRFKTQKRDEKEKFKPTVFRDTLVQRLNEDRDDLEAVAKFLDSTGSRLDYCRCADTLFDILVAGSMLAPGGTRIDDGDKTKMTNHC


Parental protein
VFSANEDHETIRNYAQVFNKLIRRYKYLEKAFEDEMKKLLLFLKAFSETEQTKLAMLSGILLGNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMAE
VFSANEDHE.I.NYAQVFNKLIRRYKYLEKAFEDEMKKLL.FLKAFS.TEQTKLAMLSGILL.NGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWM.E
Retrocopy
VFSANEDHEII*NYAQVFNKLIRRYKYLEKAFEDEMKKLLFFLKAFSKTEQTKLAMLSGILLDNGTLPATILTSLFTDSLVKEGIAASFAVKLFKAWMTE


Parental protein
KDANSVTSSLRKANLDKRLLELFPVNRQSVDHFAKY-FTDAGLKELSDFLRVQQSLGTRKELQKELQERLSQECPIKEVVLYVKEEMKRNDLPETAVIGL
KDANS..SSLRKANLDKRLLELFPVNRQSVDHFAKY...DAGLKELS.FL.VQ.SLGTRKELQKELQE.LSQECPI.EVVLYVKEEMKRNDLP.TAVIGL
Retrocopy
KDANSLLSSLRKANLDKRLLELFPVNRQSVDHFAKY/LADAGLKELSYFL*VQRSLGTRKELQKELQECLSQECPIEEVVLYVKEEMKRNDLPKTAVIGL


Parental protein
LWTCIMNAVEWNKKEELVAEQALKHLKQYAPLLAVFSSQGQSELILLQKVQEYCYDNIHFMKAFQ-KIVVLFYKADVLSEEAILKWYKEAHVAKGKSVFL
LWTCIMNAVEWNKKE.L.AEQALKHL.QYAPLLAVFSSQGQSELILLQKVQEYCYDNIHFMKAFQ...V....KA.VLSEEAILK.YKEAHVAKGKSVFL
Retrocopy
LWTCIMNAVEWNKKEDLIAEQALKHLRQYAPLLAVFSSQGQSELILLQKVQEYCYDNIHFMKAFQ/DLVLFY-KAGVLSEEAILK*YKEAHVAKGKSVFL


Parental protein
DQMKKFVEWLQNAEEESESEGEES
DQMKKFV.WLQNAEEESESEGEES
Retrocopy
DQMKKFVKWLQNAEEESESEGEES


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide