RetrogeneDB ID:
retro_ecab_1122
Organism:
Horse ( Equus_caballus )
Location:
X:82113699-82114035 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.07 %
Coverage:
98.26 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
MIF
Parental gene aliases:
No gene alias available
Parental gene description:
macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:HGNC Symbol;Acc:7097]

Genomic region (view in browser)





>retro_ecab_1122
ATGCCAATGGTGGCGGTGGACACCCACGTGCCCCGCGTCTCCGTGCTGGATGAGTTCCTC
TGCGAGTTCACCCAGCAGCTGGTGCAGGCCATAGGCAAGCCGGCACGGTCCATCACGGTG
CGTGTGGTCCGGGCCAGATCATGGCCTTCGGCGGCTTGAGCGCCGTGCGCGCCCTGCACC
CTGCATAAGCATCAGCAAGATCCGAGATGCTCCAGACCGCTCCTTCAGCAAGCTGCTGTA
CGGCCGGCTGGCCGAGTACCTGCGTGTCAGCCCAAAAGGATCTACATCCAATACTACGAC
ATAAATTCAGCCAATATGGGCTAGAACGGCTCTACC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MPMFVVNTNVPRASVPDGLLSELTQQLVQATGKPAQYIAVHVV-PDQLMTFGGSSEPCAL-CSLHSIGKIGGAQNRSYSKLLCGLLAERLRVS-PDRIYI
MPM..V.T.VPR.SV.D..L.E.TQQLVQA.GKPA..I.V.VV.P.Q.M.FGG.S...AL.....SI.KI..A..RS.SKLL.G.LAE.LRVS.P.RIYI
Retrocopy
MPMVAVDTHVPRVSVLDEFLCEFTQQLVQAIGKPARSITVRVV/PGQIMAFGGLSAVRAL/APCISISKIRDAPDRSFSKLLYGRLAEYLRVS/PKRIYI


Parental protein
NYYDMNAANVGWNGST
.YYD.N.AN.G.NGST
Retrocopy
QYYDINSANMG*NGST


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide