RetrogeneDB ID:
retro_ecab_1123
Organism:
Horse ( Equus_caballus )
Location:
X:83683019-83684606 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
97.16 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
KPNA2
Parental gene aliases:
No gene alias available
Parental gene description:
karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395]

Genomic region (view in browser)





>retro_ecab_1123
ATGTCCTCCAACGAGAATGCTAATTCCCCAGCTGCCCGCCTTAACAGATTCAAGAACAAG
GGGAAAGACAGCACAGAAATGAGGCGGCGCCAAATAGAAGTTAATGTGGAGCTGAGGAAA
GCTAAGAAAGATGACCAGATGCTGAAAAGGAGAAATGTAAGCTCCTTTCCTGATGATGCT
ACTTCTCCGCTACAGGAAAACCACAACAACCAGGGCACTGTAAATTGGTCTGTTGAGGAT
ACTGTCAAAGGCATAAATAGCAACAATTTGGAAAGCCAGCTCCAAGCTACTCAAGCTGCT
AGGAAACTGCTTTCTAGAGAAAAACAGCCCCCCATAGACAACATAATCCAGGCTGGTTTG
ATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTGTAGTCCCATTCAGTTTGAGTCT
GCTTGGGCCCTCACTAACATCGCTTCCGAGACATCAGAACAGACCAAGGCTGTGGTAGAG
GGAGGTGCTATCCCAGCATTCATTTCTCTGTTGGCATCTCCCCATGCCCACATCAGTGAA
CAAGCCGTATGGGCTCTAGGAAATATTGCAGGTGATGGTTTGGTTTTCCGAGACTTGGTG
ATCAAGTATGGTGGAGTTGACCCGCTGTTGGCTCTTCTTGCAGTTCCCGATATGTCATCT
TTGGCATGTGGTTACTTATGTAATCTTACCTGGACACTTTCAAACCTTTGTCTCAACAAG
AATCCTGCACCTCCATTAGATGCTGTTGAGCAAATTCTTCCCACTTTAGTTCGTCTCCTG
CATCATGATGATCCAGAAGTATTAGCAGATACCTGTTGGGCCATTTCCTACCCTACCGAT
GGTCCAAATGAACGGATTGAAATGGTCGTGAAAACAGGAGTGGTACCCCAACTTGTAAAG
CTTCTAGGATCTACTGAATTGCCAATTGTGACTCCTGCACTAAGAGCCATAGGAAATATT
GTCACTGGGACAGACGAACAGACTCAGGTTGTAATAGATGCGGGAGCACTTGCCATCTGT
CCCAGCCTGCTAACAAACCCCAAAACTAACATTCAGAAGGAAGCTACGTGGACAATGTCA
AACATCACAGCTGGCCGCCAGGACCGGATACAGCAAGTTGTGAATCATGGATTAGTCCCA
TTCCTCGTTGGTGTTCTCTCTAAGGCGGACTTTAAGACACAAAAGGAAGCTGTATGGGCT
GTGACCAACTATACAAGTGGTGGAACAGTTGAACAGATTGTATACCTTGTTCATTGTGGC
ATAATAGAACCGTTGATGAACCTCTTAACTGCAAAAGACACCAAAATTATTCTGGTTATT
CTGGATGCCATTTCAAATATCTTTCAGGCTGCTGAGAAACTAGGTGAAACTGAGAAACTT
AGTATAATGATCGAAGAATGTGGAGGTTTGGACAAAATTGAAGCTCTACAAAACCATGAA
AATGAGTCTATGTACAAAGCTTCATTAAACTTGATTGAGAAGTATTTCTCTGTAGAGGAA
GAGGAAGATCAAAATGTTGTGCCAGAAACTACCTCTGAAGGCTATACATTCCAAGTTCAG
GATGGCCCTCCGGGGACCTTTAACTTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.17
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSSNENANSPAARLNRFKNKGKDSTEMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGVNSNNLESQLQATQAA
MSSNENANSPAARLNRFKNKGKDSTEMRRR.IEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQEN.NNQGTVNWSVED.VKG.NSNNLESQLQATQAA
Retrocopy
MSSNENANSPAARLNRFKNKGKDSTEMRRRQIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENHNNQGTVNWSVEDTVKGINSNNLESQLQATQAA


Parental protein
RKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTNIASGTSEQTKAVVEGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV
RKLLSREKQPPIDNII.AGLIPKFVSFLGRTDCSPIQFESAWALTNIAS.TSEQTKAVVEGGAIPAFISLLASPHAHISEQAVWALGNIAGDG.VFRDLV
Retrocopy
RKLLSREKQPPIDNIIQAGLIPKFVSFLGRTDCSPIQFESAWALTNIASETSEQTKAVVEGGAIPAFISLLASPHAHISEQAVWALGNIAGDGLVFRDLV


Parental protein
IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIEMVVKTGVVPQLVK
IKYG.VDPLLALLAVPDMSSLACGYL.NLTWTLSNLC.NKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISY.TDGPNERIEMVVKTGVVPQLVK
Retrocopy
IKYGGVDPLLALLAVPDMSSLACGYLCNLTWTLSNLCLNKNPAPPLDAVEQILPTLVRLLHHDDPEVLADTCWAISYPTDGPNERIEMVVKTGVVPQLVK


Parental protein
LLGSTELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAIFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAVWA
LLGSTELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAI.PSLLTNPKTNIQKEATWTMSNITAGRQD.IQQVVNHGLVPFLVGVLSKADFKTQKEAVWA
Retrocopy
LLGSTELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAICPSLLTNPKTNIQKEATWTMSNITAGRQDRIQQVVNHGLVPFLVGVLSKADFKTQKEAVWA


Parental protein
VTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLNLIEKYFSVEE
VTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENES.YKASLNLIEKYFSVEE
Retrocopy
VTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQNHENESMYKASLNLIEKYFSVEE


Parental protein
EEDQNVVPETTSEGYTFQVQDGPPGTFDF
EEDQNVVPETTSEGYTFQVQDGPPGTF.F
Retrocopy
EEDQNVVPETTSEGYTFQVQDGPPGTFNF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide