RetrogeneDB ID:
retro_ecab_1123
Organism:
Horse ( Equus_caballus )
Location:
X:83683019-83684606 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
97.16 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
KPNA2
Parental gene aliases:
No gene alias available
Parental gene description:
karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395]
Genomic region (view in browser)
>retro_ecab_1123
ATGTCCTCCAACGAGAATGCTAATTCCCCAGCTGCCCGCCTTAACAGATTCAAGAACAAG
GGGAAAGACAGCACAGAAATGAGGCGGCGCCAAATAGAAGTTAATGTGGAGCTGAGGAAA
GCTAAGAAAGATGACCAGATGCTGAAAAGGAGAAATGTAAGCTCCTTTCCTGATGATGCT
ACTTCTCCGCTACAGGAAAACCACAACAACCAGGGCACTGTAAATTGGTCTGTTGAGGAT
ACTGTCAAAGGCATAAATAGCAACAATTTGGAAAGCCAGCTCCAAGCTACTCAAGCTGCT
AGGAAACTGCTTTCTAGAGAAAAACAGCCCCCCATAGACAACATAATCCAGGCTGGTTTG
ATTCCAAAATTTGTGTCCTTCTTGGGCAGAACTGATTGTAGTCCCATTCAGTTTGAGTCT
GCTTGGGCCCTCACTAACATCGCTTCCGAGACATCAGAACAGACCAAGGCTGTGGTAGAG
GGAGGTGCTATCCCAGCATTCATTTCTCTGTTGGCATCTCCCCATGCCCACATCAGTGAA
CAAGCCGTATGGGCTCTAGGAAATATTGCAGGTGATGGTTTGGTTTTCCGAGACTTGGTG
ATCAAGTATGGTGGAGTTGACCCGCTGTTGGCTCTTCTTGCAGTTCCCGATATGTCATCT
TTGGCATGTGGTTACTTATGTAATCTTACCTGGACACTTTCAAACCTTTGTCTCAACAAG
AATCCTGCACCTCCATTAGATGCTGTTGAGCAAATTCTTCCCACTTTAGTTCGTCTCCTG
CATCATGATGATCCAGAAGTATTAGCAGATACCTGTTGGGCCATTTCCTACCCTACCGAT
GGTCCAAATGAACGGATTGAAATGGTCGTGAAAACAGGAGTGGTACCCCAACTTGTAAAG
CTTCTAGGATCTACTGAATTGCCAATTGTGACTCCTGCACTAAGAGCCATAGGAAATATT
GTCACTGGGACAGACGAACAGACTCAGGTTGTAATAGATGCGGGAGCACTTGCCATCTGT
CCCAGCCTGCTAACAAACCCCAAAACTAACATTCAGAAGGAAGCTACGTGGACAATGTCA
AACATCACAGCTGGCCGCCAGGACCGGATACAGCAAGTTGTGAATCATGGATTAGTCCCA
TTCCTCGTTGGTGTTCTCTCTAAGGCGGACTTTAAGACACAAAAGGAAGCTGTATGGGCT
GTGACCAACTATACAAGTGGTGGAACAGTTGAACAGATTGTATACCTTGTTCATTGTGGC
ATAATAGAACCGTTGATGAACCTCTTAACTGCAAAAGACACCAAAATTATTCTGGTTATT
CTGGATGCCATTTCAAATATCTTTCAGGCTGCTGAGAAACTAGGTGAAACTGAGAAACTT
AGTATAATGATCGAAGAATGTGGAGGTTTGGACAAAATTGAAGCTCTACAAAACCATGAA
AATGAGTCTATGTACAAAGCTTCATTAAACTTGATTGAGAAGTATTTCTCTGTAGAGGAA
GAGGAAGATCAAAATGTTGTGCCAGAAACTACCTCTGAAGGCTATACATTCCAAGTTCAG
GATGGCCCTCCGGGGACCTTTAACTTT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.17 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.03 |
| SRP021940_testis | 0.18 |
Parental protein coverage
Changes in the retrocopy sequence
