RetrogeneDB ID:
retro_ecab_1124
Organism:
Horse ( Equus_caballus )
Location:
X:84088808-84089924 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
70.74 %
Coverage:
87.38 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
FBXL3
Parental gene aliases:
No gene alias available
Parental gene description:
F-box and leucine-rich repeat protein 3 [Source:HGNC Symbol;Acc:13599]

Genomic region (view in browser)





>retro_ecab_1124
GATCAGGCCCGCGCATCTTCTGTATGTAGGAGATGGAATGAAGTTTTTCATATCCCTGAC
CATTGGAGAAAGTTTGAATTTGAACTGAACCAATCAGCGACTTTGTCTTTTCAAGCCACT
CCTCGTGATCTCATTCAGCAGATCTTTAAAAGGCATGTTGCCTGTCTCCAGTATGTCAGC
TTTAAGGTTGATAGCAGTACTGAATCAGCAGAGGCTGCCTGTGATATACTTTCTCAGCTG
GGAAATGGTTCTCCACACCTTGGGCTTGATTTCTAGGGCCAATCCAAGTTTTATGAACGT
GTCAAAGTCTCATTTTGTGTCAGCACTTACACTTGCTTGTGTCAACTCAAAATCATTATC
ATCAATCAAACTTGAAGACCCACCAGTGGATGACCCTTCACTGAAGGTTCTGGTGGCCAA
TAATAGTGATACTCTAACACTCCTAAAAATGAGCAGCTGTCCTTATGTTTCATCTGATGG
AATCCTTTGTGTAGCCGATCATTGTCAAGGCCTTAGAGAACTGGCATTGAATTATTACAT
TCCAAGTGATGAACTTCTGGCCCTTTCAAGTGAGACTCATGTTAACCTTGAACATCTTCG
AATTGATGTTGTGAGTGAAAATCCTGGACAAATTAAATTTCATTCCATTAAAAAACAAAG
TTGAGATGCACTTATTAAACACTCCCCTGGAGTTAATGTTGTCATATGCTTCTTTTTAAA
CGAAGAGGAATTTGAGACATTCTTCACAGAAGAATCCCCTGTCACTCATCTTTATTTCTG
TCGGTCAGTAAGCAAAGCGGTCCTAGGACGGATAGGTCCTAACTGCCCACGCCTAGTTGA
GTTAGTGGTGTGTGCAAACGTTCTTCAGACTCTTGGTAATGAGCTGATCTGTATTGCTCA
ACACTGTAAAAACTGAACAGCCTTGGGCCTCAGTGCATGTGAAGTTCGCTGCAGTGCCGT
GGTTGAGTTTGTAAGGCTGGGTGGGAGGAGGCTCGCGCAGCTCTCTGTGATGGAGGAGGT
TCTGACCCCGATGGGGATTACAGCCTGGATAAAATTCACGCTGAAGCCTCCAAATACCTG
GGAAGAACGTGGTTCCCGGATGTCATGCCTGGCTGG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
DRAHASQVCRSWNQVFHMPDLWRCFEFELNQPATSYLKATHPELIKQIIKRHSNHLQYVSFKVDSSKESAEAACDILSQLVNCSLKTLGL-ISTARPSFM
D.A.AS.VCR.WN.VFH.PD.WR.FEFELNQ.AT....AT...LI.QI.KRH...LQYVSFKVDSS.ESAEAACDILSQL.N.S...LGL.IS.A.PSFM
Retrocopy
DQARASSVCRRWNEVFHIPDHWRKFEFELNQSATLSFQATPRDLIQQIFKRHVACLQYVSFKVDSSTESAEAACDILSQLGNGS-PHLGL\ISRANPSFM


Parental protein
DLPKSHFISALTVVFVNSKSLSSLKIDDTPVDDPSLKVLVANNSDTLKLLKMSSCPHVSPAGILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLE
...KSHF.SALT...VNSKSLSS.K..D.PVDDPSLKVLVANNSDTL.LLKMSSCP.VS..GILCVAD.C.GLRELALNY...SDE.LLALSSE.HV.LE
Retrocopy
NVSKSHFVSALTLACVNSKSLSSIKLEDPPVDDPSLKVLVANNSDTLTLLKMSSCPYVSSDGILCVADHCQGLRELALNYYIPSDE-LLALSSETHVNLE


Parental protein
HLRIDVVSENPGQTHFHTIQKSSWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLVELVVCANGLRPLDEELIR
HLRIDVVSENPGQ..FH.I.K.S.DA.I.HSP.VN.V..FFL.EEEF..FF..E.P.THLYF.RSVSK.VLGR.G..CPRLVELVVCAN.L..L..ELI.
Retrocopy
HLRIDVVSENPGQIKFHSIKKQS*DALIKHSPGVNVVICFFLNEEEFETFFTEESPVTHLYFCRSVSKAVLGRIGPNCPRLVELVVCANVLQTLGNELIC


Parental protein
IAERCKNLSAIGLGECEVSCSAFVEFVKMCGGRLSQLSIMEEVLI-PDQKYSLEQIHWEVSKHLGRVWFPDMMPTW
IA..CKN..A.GL..CEV.CSA.VEFV...G.RL.QLS.MEEVL..PD..YSL..IH.E.SK.LGR.WFPD.MP.W
Retrocopy
IAQHCKN*TALGLSACEVRCSAVVEFVRLGGRRLAQLSVMEEVLT/PDGDYSLDKIHAEASKYLGRTWFPDVMPGW


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide