RetrogeneDB ID:
retro_ecab_1125
Organism:
Horse ( Equus_caballus )
Location:
X:89897832-89898817 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
75.23 %
Coverage:
98.8 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
G3PDH
Parental gene aliases:
GAPDH, G3PDH
Parental gene description:
glyceraldehyde-3-phosphate dehydrogenase [Source:RefSeq peptide;Acc:NP_001157328]

Genomic region (view in browser)





>retro_ecab_1125
ATGGTGAAAACTGGCGTAAATGGGTTTGGCCATATTGGCTGCCTGGTTACCAGGGCTGCT
TTTAACTCTGGCTAAGTGGATATTGTCGCCATCAGTGACCCCTTCATTGACCTCATCTAC
ATGGTCTACATGCTCCTGTATGATTCCACCCATGGAAAGTTCAATGGCACAGTCTAGTCT
GAAAACAGGAAGCTTGTCATCAGTGGAAAGTCCATCCTCATTTTCCGGGAACAAGATCCC
TCCAACATCAAATGAGGTGATCCTGGTGTTAAATACATTGCGTAATGCACTGGTGTCTTC
ACCGCCTTGGAGAAGACTGAGGCTTTCTTGAAGGGTAGAAACAACAGGGCCATCATCTTT
GCCCCTTCTGATGATGCCCCTATGTTTGTGATGGCCATGAACCATGAGAAGTATGACAAC
TCCTTCAGGATTGTCAGCAATGCCTCCTGTACCACTGCCTGCTTGGCCTCCCTGGACAAG
GTCATGCATGACCACTTTGGCATTGTGGAAGGACTCATGACCATAGTCCATGCCATTACT
GCCACCCATAAGACTGTGGATGATCCCTCTGGAAAGCTGTGGCATGTTGGCCAAGTGGCT
GCCCAGAACATCATCCCTGTTTCTACTGATGCTGCCAAGGCTGTGGGCAACGTCATCCCT
GAGCTGAATGGGAATCTCATGGTATGGCCTTTCATATCCCCATCCACAATGTGTCAGACA
TGGATCTGACCTTCCACCCAGAAAAGACTGCCAAATACAATACCATCAAGAAGGTGGTGA
AGCAGGTATCAGAGGACCTCCAAAGGGCATCCTGGGCTACACTGAGGACCAAGTTGTCTC
CTGCAACTTTAACAGTGACACCCACTCTTTCACCTTTGATGCTGGGGCTGGCATTGCCCT
CAACAACCAATTTATCAAGCTCATTTTCTGGCATGACAATGAATTTGGCTACAGCAACAG
GGTGGTGGACCTTATGGTCCACATG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAEHGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVF
MVK.GVNGFG.IG.LVTRAAFNSG.VDIVAI.DPFIDL.YMVYM..YDSTHGKF.GTV..E..KLVI.GK.I.IF.E.DP.NIK.GD.G..Y....TGVF
Retrocopy
MVKTGVNGFGHIGCLVTRAAFNSG*VDIVAISDPFIDLIYMVYMLLYDSTHGKFNGTV*SENRKLVISGKSILIFREQDPSNIK*GDPGVKYIA*CTGVF


Parental protein
TTLEKAGAHLKGGAKRVIISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGA
T.LEK..A.LKG...R.II.APS.DAPMFVM..NHEKYDNS..IVSNASCTT.CLA.L.KV.HDHFGIVEGLMT.VHAITAT.KTVD.PSGK.W..G..A
Retrocopy
TALEKTEAFLKGRNNRAIIFAPSDDAPMFVMAMNHEKYDNSFRIVSNASCTTACLASLDKVMHDHFGIVEGLMTIVHAITATHKTVDDPSGKLWHVGQVA


Parental protein
AQNIIPASTGAAKAVGKVIPELNGKLT-GMAFRVPTPNVSVVDLTCRLEKAAKYDEIKKVVKQASE-GPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAG
AQNIIP.ST.AAKAVG.VIPELNG.L..GMAF..P..NVS..DLT...EK.AKY..IKKVVKQ.SE.GP.KGILGYTEDQVVSC.FNSDTHS.TFDAGAG
Retrocopy
AQNIIPVSTDAAKAVGNVIPELNGNLM/GMAFHIPIHNVSDMDLTFHPEKTAKYNTIKKVVKQVSE/GPPKGILGYTEDQVVSCNFNSDTHSFTFDAGAG


Parental protein
IALNDHFVKLISWYDNEFGYSNRVVDLMAHM
IALN..F.KLI.W.DNEFGYSNRVVDLM.HM
Retrocopy
IALNNQFIKLIFWHDNEFGYSNRVVDLMVHM


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide