RetrogeneDB ID:
retro_ecab_1127
Organism:
Horse ( Equus_caballus )
Location:
X:99988101-99988544 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
51.01 %
Coverage:
86.47 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1127
ATGAAGAAACAAAGGAATATGTTGCAAAAGAAAGAACAAAATAAAACTCCAGAAACAGAC
CTTAATGAAACAAAGATAAGTGATTTACCTGATAATGAGCTCAAGATAATGGTTATAAAG
ATGCTCACTGAGGTCAGGAGAAAAATGCATGAGCAAAGTGAGCATTTCAACAAAGGTACA
GAAAATATAAGAAAGTACCAAACAGAAGTCACAAAGCTGAAGAATACAATAACTGTACTG
AAAAGTTCAACAGAGGAGTTCAACAACAGGGTAGATCAAGCAGAAGTAAGGATCAGTCAA
CTGAAAGGGCAGTAGAATACACCCACTCAGAGGAGCAAAAAGAAAAAAGAATGAAAAAGA
GCAAAAATAGCTTAAAGGACTTACAGGAGATCATCAAGTGGACCAATAGTCAAATTATAG
GGGTCTCAGAAGGAAAAGAAAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKKQGNMFQMKEQDK-PENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNKETDSIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERISE
MKKQ.NM.Q.KEQ.K.PE..LNE...S.LP..E....VIKMLT...R.M.E.S..FNK.T..IRK.Q.EVT.LKNTI..L....E.FN.R.D.AE.RIS.
Retrocopy
MKKQRNMLQKKEQNKTPETDLNETKISDLPDNELKIMVIKMLTEVRRKMHEQSEHFNKGTENIRKYQTEVTKLKNTITVLKSSTEEFNNRVDQAEVRISQ


Parental protein
LNDR-AELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPEGEER
L.....E.T.SE............SL..L...IK..N..IIGV.EG.ER
Retrocopy
LKGQ/VEYTHSEEXXXXXXXXXXXSLKDLQEIIKWTNSQIIGVSEGKER


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide