RetrogeneDB ID:
retro_ecab_1128
Organism:
Horse ( Equus_caballus )
Location:
X:100190973-100192142 (-)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
69.05 %
Coverage:
85.43 %
Frameshifts:
2
Stop codons:
0
Parental gene:
Parental gene symbol:
DCAF12
Parental gene aliases:
DCAF12, WDR40A
Parental gene description:
DDB1 and CUL4 associated factor 12 [Source:HGNC Symbol;Acc:19911]
Genomic region (view in browser)
>retro_ecab_1128
CTGCGCGGCTACGCGGTGCAGAAGCTGCCCGAGCTGCTGCGGGAGCGCGAGCTGGCCCTG
GGCACCCTCAACAAGGTGTTCGCGTCGCAGTGGCTGAACGCCAGGCAGGTGGTGTGCGGC
ACCAAGTGCAACACGCTCTTCGTGGTGGACGTGCAGTCGGGCCAGATCACGCGCATCCCC
CTCATGCGGGACCGGGAACCCGGGCCGGCTCGGGCCCAGACGAGCTGCGGCATCCACGCC
ATCGAGTTGAATCCCTCCAAGACGCTTCTGGCCACGGGGGGCGAGAACCCCAACAGTCTG
GCTGTCTACCAGCTGCCCACCCTGGACCCCGTGTGCCTGGGCGACCGCCTCGGCCACAGG
GACTGGATCTTCGCCATCGCCTGGATGAGTGACACAGTGGCTGTGAGCGGCTCCCGCGAT
GGCACCGTGGCTCTGTGGCGGATGGACCCCGACATATTCAATGGCAGCATCGCCTGGCAC
AACGACGCGGGGCTCCCCGTGTACGCCCACATCCGTCCAAGGGACTTGGAGACCATCCCC
AGGGCCAGCACCAACCCCAGTAACCGCAAGGTACGGGCCCTGGCCTTCAGTGGCAAGAAC
CAGGAGCTGGGAGCGGTGTCCCTGGACGGCTACTTCCACCTGTGGAAAGCCCGGAGCACC
CTGTCCAGGCTGCTGTCCATCAGGCTGCCCTACTGCCGAGAGAACGTGTGCCTAACCTAC
TGCGACGAGTTGTCCCTGTACGCGGTGGGCTCCCAGTCCCACGTCTCTTTCCTGGATCCC
CGCCAGCGCCAGCAGAACATCACGGCCCCTGTGCTCTCGAGAGGGCGGCACGGGCGTGCG
CTCGCTGAGCTTCTACCAGCACATCGTCACCGTGGGCACGGGCCACGGCTCCCTGCTCTT
CTATGACGTCAGAGCGCAGAAGTTCCTGGAAGGAGAAGGCCTTGGCCAGCCCGGACTCCT
CTCCCGGGCCCGCAGCGAGGAAGCTCAAGCTCACCTGTGGCAGAGGCTGGCTCAACCACG
ATGACCTGTGGGTGAACTACTTTGGCGGCGTAGGCGAGTTCCCCAACGCGCTCTACACCC
ACTGCTACAACTGGCCTGAGATGAAGCTCTTCGTGGCTGGGGGCCCTCTCCCTTCAGGCC
TCCATGGGAACTACGCAGGCCTCTGGAGC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 1.49 |
| SRP021940_embryo | 3.52 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.31 |
| SRP021940_testis | 35.9 |
Parental protein coverage
Changes in the retrocopy sequence
