RetrogeneDB ID:
retro_ecab_113
Organism:
Horse ( Equus_caballus )
Location:
1:181175942-181176584 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.65 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL10
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L10 [Source:HGNC Symbol;Acc:10298]

Genomic region (view in browser)





>retro_ecab_113
ATGGGCCGCCGCCCCGCTCGCTGTTACCGCTACTGTAAGAACAAGCCTTACCCAAAGTCT
CGCTTCTGCCGCGCGGTCCCCGATGCCAAGATCCGCATCTTCGACCTGGGCCGGAAGAAG
GCCAAAGTGGACGAGTTCCCGCTCTGTGGGCACATGGTGTCTGATGAACACGAGCAGCTC
TCCTCCGAGGCCCTGGAGGCCGCGCGCATCTGTGCCAACAAGTACTTGGTGAAAAGCTGC
GGCCGCGACGGCTTTCACCTCCGCGTGCGGCTCCACCCCTTCCACGTCATCCGCATCAAC
AAGATGATGGCCTGTGCTGGGGCCGACAGGCTCCAAACCGGCATGCGGGGGGCCTTCGGA
AAGCCCCAGGGCACGGTGGCCAGAGTCTGCATCGGCCAGATCATCATGTCCATCCGCACC
AAGCTTCAGAACAAGGAGCACGTGGTGGAAGCCTTACGCAGGGCCAAGTTCAAGTTCCCC
GGCCGCCAGAAGATCCACGTCTCCAAGAAGTGGGGCTTTACCAAGTTTAATGCCCATAAA
TTTGATGACAAGGTGGCCGAGAAGCGCCTCATCCCGGATGGTTGTGGAGTCAAATACGTG
CCCAGTCGTGGCCCCCTGGCCCCGTGGCGAGCTCTGTACTCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.09
SRP021940_synovial_membrane 0.05
SRP021940_testis 2.91

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRIN
MGRRPARCYRYCKNKPYPKSRFCR.VPDAKIRIFDLGRKKAKVDEFPLCGHMVSDE.EQLSSEALEAARICANKY.VKSCG.DGFH.RVRLHPFHVIRIN
Retrocopy
MGRRPARCYRYCKNKPYPKSRFCRAVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEHEQLSSEALEAARICANKYLVKSCGRDGFHLRVRLHPFHVIRIN


Parental protein
KMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYI
KM..CAGADRLQTGMRGAFGKPQGTVARV.IGQ.IMSIRTKLQNKEHV.EALRRAKFKFPGRQKIH.SKKWGFTKFNA..F.D.VAEKRLIPDGCGVKY.
Retrocopy
KMMACAGADRLQTGMRGAFGKPQGTVARVCIGQIIMSIRTKLQNKEHVVEALRRAKFKFPGRQKIHVSKKWGFTKFNAHKFDDKVAEKRLIPDGCGVKYV


Parental protein
PNRGPLDKWRALHS
P.RGPL..WRAL.S
Retrocopy
PSRGPLAPWRALYS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide