RetrogeneDB ID:
retro_ecab_1130
Organism:
Horse ( Equus_caballus )
Location:
X:105343875-105344150 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.21 %
Coverage:
94.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
HMGN1
Parental gene aliases:
No gene alias available
Parental gene description:
high mobility group nucleosome binding domain 1 [Source:HGNC Symbol;Acc:4984]

Genomic region (view in browser)





>retro_ecab_1130
AAGGTCAATTCAGTCGAAGGGGTGGTGAAGGGAGAGCCCAAGAGACTTGTGAGGTTGTCA
GCTAAATCTACTCCTGCAAAGGTGGAAACAATGCCCAAAAAGGCAGCAAGAAAGGATAAA
CTCTCAGATCAAAAAGTGCGAACAAAAGGGAAAAGGAGAAGAAGGGGCAAACAGGCAGAA
ATGGTTAACTAAGAAACTAAAGATTGGCATGCAGAAAACAGAGAACTGAAAATGAGCAGA
ATCCAGCCTCTAATGAAGCAGGAGTGAAAGAAGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QVSSAEGAAKEEPKRRSARLSAKPAPAKVETKPKKVAGKDKSSDKKVQTKGKRGAKGKQAEVANQETKEDLPAENGE-TKNEESAASDEAGEKEA
.V.S.EG..K.EPKR...RLSAK..PAKVET.PKK.A.KDK.SD.KV.TKGKR...GKQAE..N.ETK.D..AEN.E.T.NE...AS.EAG.KEA
Retrocopy
KVNSVEGVVKGEPKRL-VRLSAKSTPAKVETMPKKAARKDKLSDQKVRTKGKRRRRGKQAEMVN*ETK-DWHAENRE/TENEQNPASNEAGVKEA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide