RetrogeneDB ID:
retro_ecab_1131
Organism:
Horse ( Equus_caballus )
Location:
X:106095360-106095663 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.23 %
Coverage:
76.52 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_1131
GCACATGGGATTCGCGATGCTGCCAAAGCCTTAGACAAGCACCAAGCTCATCTTTGAATG
CTTGTTTCCAACTGTGATGAGCCTGCGTGTGTCAAGTTGGTGGAGGCCCTTTGTACTAAA
CATCAAATCAACCTAGTTAAGGTCGATGACAACAAGAAACCAGGAGAATGGGTAGGCCTC
TGTAAAACTGATAGAGAGGGAAAATCCCGCACTGTGGTTGGTTGCAGCTGTGCGGTAGTG
AAGGACCACAGCAAAGAGTCTCAGGCCAAGGGTATCATTGAGGGGTAGTCCAAATGCAAG
AAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEYFKCK
A.GIR.AAKALDK.QAHL..L.SNCDEP..VKLVEALC..HQINL.KVDDNKK.GEWVGLCK.DREGK.R.VVGCSC.VVKD..KESQAK..IE...KCK
Retrocopy
AHGIRDAAKALDKHQAHL*MLVSNCDEPACVKLVEALCTKHQINLVKVDDNKKPGEWVGLCKTDREGKSRTVVGCSCAVVKDHSKESQAKGIIEG*SKCK


Parental protein
K
K
Retrocopy
K


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide