RetrogeneDB ID:
retro_ecab_114
Organism:
Horse ( Equus_caballus )
Location:
20:4796426-4796819 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.15 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
RPS15A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S15a [Source:HGNC Symbol;Acc:10389]

Genomic region (view in browser)





>retro_ecab_114
ATGGTGCGCATGAATGTCCTGGCTGATGCTCTCAAGAGCGTCAACAATGCCGAGAAGAGC
GGCAAACGCCAGGTGCTCATTAGGCCATGCTCCAAAGTCATTGTCCGGTTTCTGACTGTG
ATGATGAAGCATGGTTACATTGGCAAATTTGAAATCATCGATGACCACAGAGCTGGGAAG
ATTGTTGTGAACCTCACGGGCAGGTTAAACAAGTGTGGAGTGATCAGCCCCAGATTTGAC
GTGCAACTGAAAGATCTAGCAAAATGGCAAAATAACTTGCTCCCATCCCATCAGTTTGGT
TTTATTGTACTGACAACCTCAGCTGGCATCATGGACCATGAAGAAGCAAGACGAAAACAC
ACAGGAGGGAAAATCCTGGGATTCTTTTTCTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.64
SRP021940_cerebellum 0.35
SRP021940_embryo 0.29
SRP021940_placental_villous 0.85
SRP021940_synovial_membrane 0.39
SRP021940_testis 1.31

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFG
MVRMNVLADALKS.NNAEK.GKRQVLIRPCSKVIVRFLTVMMKHGYIG.FEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDL.KWQNNLLPS.QFG
Retrocopy
MVRMNVLADALKSVNNAEKSGKRQVLIRPCSKVIVRFLTVMMKHGYIGKFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLAKWQNNLLPSHQFG


Parental protein
FIVLTTSAGIMDHEEARRKHTGGKILGFFF
FIVLTTSAGIMDHEEARRKHTGGKILGFFF
Retrocopy
FIVLTTSAGIMDHEEARRKHTGGKILGFFF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide