RetrogeneDB ID:
retro_ecab_117
Organism:
Horse ( Equus_caballus )
Location:
1:16804283-16804892 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
50.72 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
5


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_117
GAGACTAAAACTCTAAAAAAGAACTAAACAGAAACACTAGAGCTGAGGAACCCAATAAAG
GAGTTGAAGAATGCATCAGAAAGCACTGGAAATAGAGCAGACCATATGGAAGAGAGAATT
AGTGAGCTCAAAGAATAAAAAGCTAGAAATGATGTAGGTAGAAGAAGAGAGAGAATTAAG
ATTTTTTTTTAAATGTAGAAATTCTATGAGAATTATCAGATTCTGTTAGAAAGGGCAACA
TAAGGATAAGGTATCTCAGCAGGAGGAGAGAGAAGGAAGAAGACAGCTTGTTTAAAGAAA
TAATAGATAAGAACTTCACAAACTTGGGATGGAACTGGATATACAAATCCATGAAGCTAA
TACAACACCCAATTATCTCAACACAAAAAGATATTTTCCAAGATACATGATAATAAAACT
CAAAAATCAGTGACAAAGCAAGAATATTAAAGGCAGCCGGGGGGGGCAAGAAACCCAATA
GCTTACATGGGAACCCCCTTTAGGCTATCAGCAGATGTCTGAACAGAAACTCTACAAGTC
AGTAGAGAGTGGAATGATATATTCAAAACACTGAAACATAAAAACTGTCAGCCAAGAATA
CTCTATCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EINTIKKNQSKTLEMKNTMDEVKKNLGSVNNRADIIEETISSLED-RNIEILQIEEERELRLKR-NEEILQEVSKSIRKGNIRLIGIPEGEEKDKGAESL
E..T.KKN...TLE..N...E.K....S..NRAD..EE.IS.L......E....EEERELR....N.EIL.E.S.S.RKGNIR........EK.....SL
Retrocopy
ETKTLKKN*TETLELRNPIKELKNASESTGNRADHMEERISELKE\KKLEMM*VEEERELRXXX\NVEIL*ELSDSVRKGNIRIRYLSRRREKEE--DSL


Parental protein
FKEIIAGNFPN-LGKELEIQVKEAKRIPNYITVKRHSPRHIVEKL-AKVNDKEKVLRAANKKQQIITYKGAPIRLSADFSTETLQARREWSDIFKALKDK
FKEII..NF.N.LG.EL.IQ..EA...PNY...KR..PR....KL..K...K....R........I.Y.G.P.RLSAD..TETLQ..REW.DIFK.LK.K
Retrocopy
FKEIIDKNFTN/LGMELDIQIHEANTTPNYLNTKRYFPRYMIIKL/QKSVTKQEY*RQXXXXRNPIAYMGTPFRLSADV*TETLQVSREWNDIFKTLKHK


Parental protein
NLQPRILYP
N.QPRILYP
Retrocopy
NCQPRILYP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide