RetrogeneDB ID:
retro_ecab_119
Organism:
Horse ( Equus_caballus )
Location:
1:33455050-33456474 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
96.64 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1
Parental gene:
Parental gene symbol:
CAP1
Parental gene aliases:
No gene alias available
Parental gene description:
CAP, adenylate cyclase-associated protein 1 (yeast) [Source:HGNC Symbol;Acc:20040]
Genomic region (view in browser)
>retro_ecab_119
ATGGCTGACATGCAAAATCTGGTAGAAAGATTAGAGAGGGCGGTGGGCCGCCTGGAGGCA
GTATCTCAGTCCTCTGGCATGCACTATGGACATGGAGACAGTGCCCCAAAAGCAGGAACA
GCTCCATATGTGCAAGTATTTGACTCACTGCTGGCCGGTCCTATGGCAGAGTACCTGAAG
ATCAGTAAAGAGATTGGGGGAGATGTGGAGAAACATGCGGAGATGGTCCACACAGGTCTG
AAGTTGGAGCGAGCTCTCTTGGTTACAGCCTCTCAGTGCCAGCAGCCTGCAGGCAATAAG
CTTTCTGATTTGTTGGCACCCATCTCAGAGCAGATCCAAGAAGTGATAACGTTTCCAGAG
AAGAACCAAGGCAGCAAGTTGTTCAATCACCTGTCGGCCGTCAGCGAAAGTATCCAGGCC
CTGGGTTGCGTGGCTGTGGCTCCCAAGCCTGGTCCCTATGTGAAAGAAATGAATGATGCT
GCCATGTTTTATACAAACCGAGTCCTGAAGGAGTACAAAGATGTGGATAAGAAGCATGTG
GACTGGGTCAAAGCTTACTTGAGTATATGGACAGAGCTGCAGGCTTACATTAAACAGTTC
CATACCACCAGACTGGCCTGGAGCAAAACGGGACCTGTGGCAAAAAAACTGACTGGACTG
CCATCTGGACCCTCTGCTGGATCCGGTCCTCCTCCCCCGCCACCAGGCCCACCTCCTCCC
CCAGTCCCCACCAGTTCAGGCTCTGATGAGTCTGCTTCACGCTCTGCCCTGTTTGCTCAG
ATTAATCAGGGGGAGAGCATCACACATGCCCTGAAACATGTATCTGATGACATGAAGACG
CACAAGAACCCCGCCCTGAAGGCTCAGAGTGGGCCAGTGCGAAGTGGCCCCAAACCATTC
TCTGCACCTAAACCAGGAGGCAGCCCATCCCCCAAACCAGCCACAAAGAAGGAGCCACCT
CTACTTGAACTGGAGGGCAAAAAGTGGAGAGTGGAAAATCAGGAGAATGTTTCCAACCTG
GTAATTGATGACACGGAGCTGAAATAGGTGGCTTACATATACAAGTGTGTCAACACAACA
TTGCAAATCGAGGGCAAAATTAACTCCATTACAGTAGATAACTGTAAGAAACTCGGCCTG
GTGTTCGATGACGTGGTGGGCATAGTGGAGATAATCAATAGTAGGGATGTCAAAGTTCAG
GTAATGGGTAAAGTGCCAACCATTTCCATCAACAAAACAGATGGCTGCCACGTTTCCCTA
GCAAGAATTCCCTGGATTGTGAGATAGTCAGTGCCAAATCTTCTGAAATGAATGTCCTCA
TTCCTACAGAAGGCGGTGACTTTAATGAGTTCCCAGTCCCTGAGCAGTTCAAGACCCTAT
GGAATGGGCAGAAGTTGGTCACCACAGTGACAGAAATTGCCGGA
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.17 |
| SRP021940_cerebellum | 0.35 |
| SRP021940_embryo | 0.53 |
| SRP021940_placental_villous | 0.22 |
| SRP021940_synovial_membrane | 0.52 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
