RetrogeneDB ID:
retro_ecab_119
Organism:
Horse ( Equus_caballus )
Location:
1:33455050-33456474 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
96.64 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
CAP1
Parental gene aliases:
No gene alias available
Parental gene description:
CAP, adenylate cyclase-associated protein 1 (yeast) [Source:HGNC Symbol;Acc:20040]

Genomic region (view in browser)





>retro_ecab_119
ATGGCTGACATGCAAAATCTGGTAGAAAGATTAGAGAGGGCGGTGGGCCGCCTGGAGGCA
GTATCTCAGTCCTCTGGCATGCACTATGGACATGGAGACAGTGCCCCAAAAGCAGGAACA
GCTCCATATGTGCAAGTATTTGACTCACTGCTGGCCGGTCCTATGGCAGAGTACCTGAAG
ATCAGTAAAGAGATTGGGGGAGATGTGGAGAAACATGCGGAGATGGTCCACACAGGTCTG
AAGTTGGAGCGAGCTCTCTTGGTTACAGCCTCTCAGTGCCAGCAGCCTGCAGGCAATAAG
CTTTCTGATTTGTTGGCACCCATCTCAGAGCAGATCCAAGAAGTGATAACGTTTCCAGAG
AAGAACCAAGGCAGCAAGTTGTTCAATCACCTGTCGGCCGTCAGCGAAAGTATCCAGGCC
CTGGGTTGCGTGGCTGTGGCTCCCAAGCCTGGTCCCTATGTGAAAGAAATGAATGATGCT
GCCATGTTTTATACAAACCGAGTCCTGAAGGAGTACAAAGATGTGGATAAGAAGCATGTG
GACTGGGTCAAAGCTTACTTGAGTATATGGACAGAGCTGCAGGCTTACATTAAACAGTTC
CATACCACCAGACTGGCCTGGAGCAAAACGGGACCTGTGGCAAAAAAACTGACTGGACTG
CCATCTGGACCCTCTGCTGGATCCGGTCCTCCTCCCCCGCCACCAGGCCCACCTCCTCCC
CCAGTCCCCACCAGTTCAGGCTCTGATGAGTCTGCTTCACGCTCTGCCCTGTTTGCTCAG
ATTAATCAGGGGGAGAGCATCACACATGCCCTGAAACATGTATCTGATGACATGAAGACG
CACAAGAACCCCGCCCTGAAGGCTCAGAGTGGGCCAGTGCGAAGTGGCCCCAAACCATTC
TCTGCACCTAAACCAGGAGGCAGCCCATCCCCCAAACCAGCCACAAAGAAGGAGCCACCT
CTACTTGAACTGGAGGGCAAAAAGTGGAGAGTGGAAAATCAGGAGAATGTTTCCAACCTG
GTAATTGATGACACGGAGCTGAAATAGGTGGCTTACATATACAAGTGTGTCAACACAACA
TTGCAAATCGAGGGCAAAATTAACTCCATTACAGTAGATAACTGTAAGAAACTCGGCCTG
GTGTTCGATGACGTGGTGGGCATAGTGGAGATAATCAATAGTAGGGATGTCAAAGTTCAG
GTAATGGGTAAAGTGCCAACCATTTCCATCAACAAAACAGATGGCTGCCACGTTTCCCTA
GCAAGAATTCCCTGGATTGTGAGATAGTCAGTGCCAAATCTTCTGAAATGAATGTCCTCA
TTCCTACAGAAGGCGGTGACTTTAATGAGTTCCCAGTCCCTGAGCAGTTCAAGACCCTAT
GGAATGGGCAGAAGTTGGTCACCACAGTGACAGAAATTGCCGGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.17
SRP021940_cerebellum 0.35
SRP021940_embryo 0.53
SRP021940_placental_villous 0.22
SRP021940_synovial_membrane 0.52
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MADMQNLVERLERAVGRLEAVSQSSDMHCGHGDSAPKAGTAPYVQVFDSLLAGPVAEYLKISKEIGGDVQKHAEMVHTGLKLERALLVTASQCQQPAGNK
MADMQNLVERLERAVGRLEAVSQSS.MH.GHGDSAPKAGTAPYVQVFDSLLAGP.AEYLKISKEIGGDV.KHAEMVHTGLKLERALLVTASQCQQPAGNK
Retrocopy
MADMQNLVERLERAVGRLEAVSQSSGMHYGHGDSAPKAGTAPYVQVFDSLLAGPMAEYLKISKEIGGDVEKHAEMVHTGLKLERALLVTASQCQQPAGNK


Parental protein
LSDLLAPISEQIQEVITFREKNRGSKLFNHLSAVSESIQALGWVAMAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKEF
LSDLLAPISEQIQEVITF.EKN.GSKLFNHLSAVSESIQALG.VA.APKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIK.F
Retrocopy
LSDLLAPISEQIQEVITFPEKNQGSKLFNHLSAVSESIQALGCVAVAPKPGPYVKEMNDAAMFYTNRVLKEYKDVDKKHVDWVKAYLSIWTELQAYIKQF


Parental protein
HTTGLAWSKTGPVAKELSGLPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF
HTT.LAWSKTGPVAK.L.GLPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF
Retrocopy
HTTRLAWSKTGPVAKKLTGLPSGPSAGSGPPPPPPGPPPPPVPTSSGSDESASRSALFAQINQGESITHALKHVSDDMKTHKNPALKAQSGPVRSGPKPF


Parental protein
SAPKPGGSPSPKPATKKEPPLLELEGKKWRVENQENVSNLVIDDTELKQVAYIYKCVNTTLQIKGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQ
SAPKPGGSPSPKPATKKEPPLLELEGKKWRVENQENVSNLVIDDTELK.VAYIYKCVNTTLQI.GKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQ
Retrocopy
SAPKPGGSPSPKPATKKEPPLLELEGKKWRVENQENVSNLVIDDTELK*VAYIYKCVNTTLQIEGKINSITVDNCKKLGLVFDDVVGIVEIINSRDVKVQ


Parental protein
VMGKVPTISINKTDGCHVYL-SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG
VMGKVPTISINKTDGCHV.L.SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG
Retrocopy
VMGKVPTISINKTDGCHVSL/SKNSLDCEIVSAKSSEMNVLIPTEGGDFNEFPVPEQFKTLWNGQKLVTTVTEIAG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide